Non-Coding RNA Search

Ss1.1-rebs05c_b3.5

Sequence:


               
               AATTAAGATGACACTTACAGATCCTTAGCATTAACTTAATGATGGAGAAGAGGGCTCTGT
AGTCACTTCCCAGTAAGGTAATGAGATGCTCATTTTCAGAGAGTCCGAGACGCTATTCTG
GTTCATTAAAATATTAACTAAAAAGCTCTCTTAAGACTGGAACCCAAAAGCAATGGAGCA
ACATTAATGCCACTTCTCATGCCTCACTTTGGCAAGACAGCATTTGATTCTTTTAAAGGT
ACTTTTTTGACGATTCGATGTTCTAGTTACTTTAGCCTTAGAAGAAGAATTTTTGTTTTT
CCTCCCTTTTTTTTTTTTTTGGGTAGGAGTTCTTTAGCTAGTGACTAAGTAGACACAAAA
ATCTTGATGAAAAAAAAGTACCGTGATCATTTCCTTGAAGACAGGTGTGGCGCTGAAACT
TCCCGACTCATTTTGGGGACCCCTTTAGTCAATAGGTTTATTCTTATTCCATAGATGATT
CTTGGACTTTATACCATTTCTTCAGCATCCAAGTTAAACTAAGAACTGCCTTCCACAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTAAGATGACACTTACAGATCCTTAGCATTAACTTAATGATGGAGAAGAGGGCTCTGT
AGTCACTTCCCAGTAAGGTAATGAGATGCTCATTTTCAGAGAGTCCGAGACGCTATTCTG
GTTCATTAAAATATTAACTAAAAAGCTCTCTTAAGACTGGAACCCAAAAGCAATGGAGCA
ACATTAATGCCACTTCTCATGCCTCACTTTGGCAAGACAGCATTTGATTCTTTTAAAGGT
ACTTTTTTGACGATTCGATGTTCTAGTTACTTTAGCCTTAGAAGAAGAATTTTTGTTTTT
CCTCCCTTTTTTTTTTTTTTGGGTAGGAGTTCTTTAGCTAGTGACTAAGTAGACACAAAA
ATCTTGATGAAAAAAAAGTACCGTGATCATTTCCTTGAAGACAGGTGTGGCGCTGAAACT
TCCCGACTCATTTTGGGGACCCCTTTAGTCAATAGGTTTATTCTTATTCCATAGATGATT
CTTGGACTTTATACCATTTCTTCAGCATCCAAGTTAAACTAAGAACTGCCTTCCACAATC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-537, gnl|bosTau2|chr7 (33344613-33345153)
               

               
               1-537, gnl|Hg17|chr5 (136339997-136339422)
               

               
               1-537, gnl|Mm7|chr13 (56518681-56518170)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-537, gnl|bosTau2|chr7 (33344613-33345153)
               

               
               1-537, gnl|Hg17|chr5 (136339997-136339422)
               

               
               1-537, gnl|Mm7|chr13 (56518681-56518170)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cag (0.453583)
               

               
               ute (0.132784)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.453583)
               

               
               ute (0.132784)
               

               
               ebs (0.118301)

	1-537, gnl\|bosTau2\|chr7 (33344613-33345153)
	1-537, gnl\|Hg17\|chr5 (136339997-136339422)
	1-537, gnl\|Mm7\|chr13 (56518681-56518170)