Non-Coding RNA Search

Ss1.1-rebs05c_d24.5

Sequence:


               
               CCACGCGTCCGGGAAACTGAAAGCTGAAGACAACCAGAGAGGCTTGTGAGATCTCATGTC
AAAGTTATCACTCAAGATGCCTCTTGTCTGATGACATATGACGCCAGATAAAATGTTCAG
TGCAATCAGAGTGTACAAATTGTCATTTTTATTCCCCTTATTGGAATACCATTTTTTAAA
TTTTATTGGGGTTTTATTGTTGTTGTTTGATCCCTATCCCTATGAAGAACATCTTGCCAG
GGACTTCCCATCGCTATTGGAACAAATCATTACAAGGGAAGTGTTTGACTTCTTGCTTCA
GTCATCAGCCAGCAAGGGAGAACCAAACAGTTCTTTTGCATCTTGCCCCTGAGATATGGC
ATTGCACTGCTTCTATACCAAGCCAATTTACAGCAAAATATTGATCAAAGATACAAAGTT
GACTAATCAACCTCATGTCAAGGGCTCTCAAGATATAATCTTTCTATAACCAACTGCTAA
TGCAACTTAAAACATAACTTCATTTTAACGTGATTTTAAAATCAGTCTCTCATATCACCC
TCTGCTGGGAAAAAAAAAAAAAACATATATATATATAGCAAATGCAGAACAACCACAATC
AATTTGAATGGGGTAGAAACATTGTAAATACATACTCTTTACAACCCCTGGTGGTACTTT
ATTTTGTCTTCATTTCAATCATTGAAGTATATTCTTATTGGAAATGTACTTTTGGATAAG
TAGGGGTAAGCCAGTTGGATCTCTGGTTGTCTAGTCATTGTCATAAATCAGCCAAGCAAA
AACCTTGTTCTATTTTTCAATCAAAAAGCAATTATAAATGCATACTACATGCAAATGGAT
GTTTTTAATGACCAATTGAATAAGGACATCCCTATCTTAACTGGCCTAAATGTCTTCTGG
TAGTGTCAGTTCAACTTTCAGAAGTGCCACTTAAGGAAGTTTGAGTTTTGTTTTTGTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACGCGTCCGGGAAACTGAAAGCTGAAGACAACCAGAGAGGCTTGTGAGATCTCATGTC
AAAGTTATCACTCAAGATGCCTCTTGTCTGATGACATATGACGCCAGATAAAATGTTCAG
TGCAATCAGAGTGTACAAATTGTCATTTTTATTCCCCTTATTGGAATACCATTTTTTAAA
TTTTATTGGGGTTTTATTGTTGTTGTTTGATCCCTATCCCTATGAAGAACATCTTGCCAG
GGACTTCCCATCGCTATTGGAACAAATCATTACAAGGGAAGTGTTTGACTTCTTGCTTCA
GTCATCAGCCAGCAAGGGAGAACCAAACAGTTCTTTTGCATCTTGCCCCTGAGATATGGC
ATTGCACTGCTTCTATACCAAGCCAATTTACAGCAAAATATTGATCAAAGATACAAAGTT
GACTAATCAACCTCATGTCAAGGGCTCTCAAGATATAATCTTTCTATAACCAACTGCTAA
TGCAACTTAAAACATAACTTCATTTTAACGTGATTTTAAAATCAGTCTCTCATATCACCC
TCTGCTGGGAAAAAAAAAAAAAACATATATATATATAGCAAATGCAGAACAACCACAATC
AATTTGAATGGGGTAGAAACATTGTAAATACATACTCTTTACAACCCCTGGTGGTACTTT
ATTTTGTCTTCATTTCAATCATTGAAGTATATTCTTATTGGAAATGTACTTTTGGATAAG
TAGGGGTAAGCCAGTTGGATCTCTGGTTGTCTAGTCATTGTCATAAATCAGCCAAGCAAA
AACCTTGTTCTATTTTTCAATCAAAAAGCAATTATAAATGCATACTACATGCAAATGGAT
GTTTTTAATGACCAATTGAATAAGGACATCCCTATCTTAACTGGCCTAAATGTCTTCTGG
TAGTGTCAGTTCAACTTTCAGAAGTGCCACTTAAGGAAGTTTGAGTTTTGTTTTTGTAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               824-960, + strand, RNAz p=0.990703

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               824-960, + strand, RNAz p=0.990703

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_002941, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_002941, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               12-960, gnl|bosTau2|chr1 (13233633-13234564)
               

               
               12-960, gnl|Hg17|chr3 (78730768-78729831)
               

               
               12-960, gnl|Mm7|chr16 (73041447-73042413)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-960, gnl|bosTau2|chr1 (13233633-13234564)
               

               
               12-960, gnl|Hg17|chr3 (78730768-78729831)
               

               
               12-960, gnl|Mm7|chr16 (73041447-73042413)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	12-960, gnl\|bosTau2\|chr1 (13233633-13234564)
	12-960, gnl\|Hg17\|chr3 (78730768-78729831)
	12-960, gnl\|Mm7\|chr16 (73041447-73042413)