Non-Coding RNA Search

Ss1.1-rebs05c_g10.5

Sequence:


               
               GTGACTGCGCCGTGAGCTGCAGCTTGATGGCGGTCGAATTGATCTTGGTGGCCACGAGCA
GCTCCTTCATGCCCTTCATCTTCTCGCTCTGGAAAGTCAGCACCGGACCCTCCGGTGGCG
GCGAGGCGGCGGGCGCCGGGGTCGGCGCCGCGCTACCGCCCTCGGGGCCACGGGCAGTGC
CCGAGACCGTCCCTGGGGGCTTCCGGGGGGCTCCCGGCACCGCGCCCTGGCCCGCGCCGG
GGCCCTTGTCCAGCGCCGGCTTCTTGGGCGGCGGCGGCTCCTCAGGCTTGGATTCCCGCC
GCGGGCCTCGCCGCCGGCCTTCCCGGGCTTCCTCGCCCCACGGCTCCTCCGCTTCGGCCG
CCTCCGCCTCGCGGCTCACGATGCGTACCTTCTGCCGCACCTGTCCCTCAAAACGGCCTA
GGGACTGCACGAGGAAGGTGGCCCAGCCCACGTGCAGCACCGGCGTGGGGCTGCCCTCTT
CCCATTTGCAGATGCCATCGTAGAATCGCAGCAAGTGGGCGAAGCACTCTGGGTCCTGGA
GGGCAGAACCCTGGCTCTGGGTGCCCTGGGCCTGCTCCCCTGGCCGCTCCTCGCCAGCCT
CCAGCAGGCTGGCGCGGGGCTGGGCTGGAAAGTGAGCTCGGGCACGTTGGTGGGGATGAC
GCGGTTGACAGCTAGGAAGTGCTCCACGAAGCCCAGCACCAGGGATAGGACCACCAGGTC
CGGCTCCTCTCGGCCCAGCTCCGCAGCGAACAGGCGCACCACGTCGTCGATGGAGCGCAG
CGGGAACAGCGTCTTCTGGGCGGCCTTCAGCCCCATGGCGGCGGGCCTCGGCATCCCACA
CAAGGCACCGCGGCGCCCGCCGCCTGGAGCCTGCTGGGAAATGGAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGACTGCGCCGTGAGCTGCAGCTTGATGGCGGTCGAATTGATCTTGGTGGCCACGAGCA
GCTCCTTCATGCCCTTCATCTTCTCGCTCTGGAAAGTCAGCACCGGACCCTCCGGTGGCG
GCGAGGCGGCGGGCGCCGGGGTCGGCGCCGCGCTACCGCCCTCGGGGCCACGGGCAGTGC
CCGAGACCGTCCCTGGGGGCTTCCGGGGGGCTCCCGGCACCGCGCCCTGGCCCGCGCCGG
GGCCCTTGTCCAGCGCCGGCTTCTTGGGCGGCGGCGGCTCCTCAGGCTTGGATTCCCGCC
GCGGGCCTCGCCGCCGGCCTTCCCGGGCTTCCTCGCCCCACGGCTCCTCCGCTTCGGCCG
CCTCCGCCTCGCGGCTCACGATGCGTACCTTCTGCCGCACCTGTCCCTCAAAACGGCCTA
GGGACTGCACGAGGAAGGTGGCCCAGCCCACGTGCAGCACCGGCGTGGGGCTGCCCTCTT
CCCATTTGCAGATGCCATCGTAGAATCGCAGCAAGTGGGCGAAGCACTCTGGGTCCTGGA
GGGCAGAACCCTGGCTCTGGGTGCCCTGGGCCTGCTCCCCTGGCCGCTCCTCGCCAGCCT
CCAGCAGGCTGGCGCGGGGCTGGGCTGGAAAGTGAGCTCGGGCACGTTGGTGGGGATGAC
GCGGTTGACAGCTAGGAAGTGCTCCACGAAGCCCAGCACCAGGGATAGGACCACCAGGTC
CGGCTCCTCTCGGCCCAGCTCCGCAGCGAACAGGCGCACCACGTCGTCGATGGAGCGCAG
CGGGAACAGCGTCTTCTGGGCGGCCTTCAGCCCCATGGCGGCGGGCCTCGGCATCCCACA
CAAGGCACCGCGGCGCCCGCCGCCTGGAGCCTGCTGGGAAATGGAGTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9BUF0_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9BUF0_HUMAN

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-403, gnl|bosTau2|chr29 (33953670-33954072)
               

               
               1-403, gnl|Hg17|chr11 (64328465-64328867)
               

               
               1-403, gnl|Mm7|chr19 (6234895-6234490)
               


               
               597-832, gnl|bosTau2|chr29 (33958326-33958563)
               

               
               597-832, gnl|Hg17|chr11 (64333936-64334173)
               

               
               597-832, gnl|Mm7|chr19 (6230488-6230251)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-403, gnl|bosTau2|chr29 (33953670-33954072)
               

               
               1-403, gnl|Hg17|chr11 (64328465-64328867)
               

               
               1-403, gnl|Mm7|chr19 (6234895-6234490)
               


               
               597-832, gnl|bosTau2|chr29 (33958326-33958563)
               

               
               597-832, gnl|Hg17|chr11 (64333936-64334173)
               

               
               597-832, gnl|Mm7|chr19 (6230488-6230251)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.133672)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               ebs (0.118301)

	1-403, gnl\|bosTau2\|chr29 (33953670-33954072)
	1-403, gnl\|Hg17\|chr11 (64328465-64328867)
	1-403, gnl\|Mm7\|chr19 (6234895-6234490)

	597-832, gnl\|bosTau2\|chr29 (33958326-33958563)
	597-832, gnl\|Hg17\|chr11 (64333936-64334173)
	597-832, gnl\|Mm7\|chr19 (6230488-6230251)