Non-Coding RNA Search

Ss1.1-rebs05c_h15.5

Sequence:


               
               GAGCGGACGCACCAGGCCCAGGTGGCGTTCCAGGTGTGCGTGCGCCCTGGCTCCTACACC
CCCGGGCCCCCTTCTGCTGCCCTCAGAGAGCCTCCCGACCCTCACTTCAGCCCAGCTGAA
CTCGAGTGGGTGACCAAGGAGAAGGGGGCCACGCTCCTCTATGCCCTGCTGGTACGGGTG
GAATGAGGGGTGACACCGCACTACGACAAGCACAGCAGGGCCTTGGGCCCGTGGACTCTG
AGTGACGACTGCCTCCACCTCATTCCAGTGACGCGCGGCATGCACGGTGCTCAGCCTGGC
AGATGCACAGGAGCATGTAGGCGGGCTCGCAGAGGAGCGCCCGGGGCCGGGACTGGACAG
CCCCTCGAGGCGAGGGCGGCGAGGGGTCCGGCCGCCGGCCCTGGGGAACCCTCTCCATGC
ACTGATCTGGGGAGCGCGCCTCCCCGCCACTCCTCCCCCTACACTTAATTTATTTCCGTT
TCTGTTCCTGGTTACTGTGAAGGCCAGAGGCGCCTCCCCGCGCCCCACACGAAGCTGCTT
TTCCGGGCCGGGCGGGAGTGGGGAAGGCGGGCGCGGGTCGGGGCCTCTGTACAGTTGTTA
CTGACTCTGATTTCTAAGGAGCCAATAAACGCCGTCTCAGAGCAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCGGACGCACCAGGCCCAGGTGGCGTTCCAGGTGTGCGTGCGCCCTGGCTCCTACACC
CCCGGGCCCCCTTCTGCTGCCCTCAGAGAGCCTCCCGACCCTCACTTCAGCCCAGCTGAA
CTCGAGTGGGTGACCAAGGAGAAGGGGGCCACGCTCCTCTATGCCCTGCTGGTACGGGTG
GAATGAGGGGTGACACCGCACTACGACAAGCACAGCAGGGCCTTGGGCCCGTGGACTCTG
AGTGACGACTGCCTCCACCTCATTCCAGTGACGCGCGGCATGCACGGTGCTCAGCCTGGC
AGATGCACAGGAGCATGTAGGCGGGCTCGCAGAGGAGCGCCCGGGGCCGGGACTGGACAG
CCCCTCGAGGCGAGGGCGGCGAGGGGTCCGGCCGCCGGCCCTGGGGAACCCTCTCCATGC
ACTGATCTGGGGAGCGCGCCTCCCCGCCACTCCTCCCCCTACACTTAATTTATTTCCGTT
TCTGTTCCTGGTTACTGTGAAGGCCAGAGGCGCCTCCCCGCGCCCCACACGAAGCTGCTT
TTCCGGGCCGGGCGGGAGTGGGGAAGGCGGGCGCGGGTCGGGGCCTCTGTACAGTTGTTA
CTGACTCTGATTTCTAAGGAGCCAATAAACGCCGTCTCAGAGCAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|37231652|gb|AAH58434.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|37231652|gb|AAH58434.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-338, gnl|bosTau2|chr19 (20904845-20905180)
               

               
               2-338, gnl|Hg17|chr17 (7160350-7160011)
               

               
               2-338, gnl|Mm7|chr11 (69994721-69995056)
               


               
               366-644, gnl|bosTau2|chr19 (20905238-20905521)
               

               
               366-644, gnl|Hg17|chr17 (7159966-7159673)
               

               
               366-644, gnl|Mm7|chr11 (69995099-69995396)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-338, gnl|bosTau2|chr19 (20904845-20905180)
               

               
               2-338, gnl|Hg17|chr17 (7160350-7160011)
               

               
               2-338, gnl|Mm7|chr11 (69994721-69995056)
               


               
               366-644, gnl|bosTau2|chr19 (20905238-20905521)
               

               
               366-644, gnl|Hg17|chr17 (7159966-7159673)
               

               
               366-644, gnl|Mm7|chr11 (69995099-69995396)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fbs (0.350693)
               

               
               nmm (0.132802)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.350693)
               

               
               nmm (0.132802)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	2-338, gnl\|bosTau2\|chr19 (20904845-20905180)
	2-338, gnl\|Hg17\|chr17 (7160350-7160011)
	2-338, gnl\|Mm7\|chr11 (69994721-69995056)

	366-644, gnl\|bosTau2\|chr19 (20905238-20905521)
	366-644, gnl\|Hg17\|chr17 (7159966-7159673)
	366-644, gnl\|Mm7\|chr11 (69995099-69995396)