Non-Coding RNA Search

Ss1.1-rebs05c_l14.5

Sequence:


               
               CTTTGGAATGTTGGAGTTCCCAAACAGTATCTTCCATATATGTAGGGGCCATTCAGAACG
GAGTGCAGGCAGACTCAGCAGGATGCAGAAGTTATGGAACGGCCTTAAGGCTGCGTTGGG
GAGGTCGTGCGGCTGGAGGACTCGAACCCAGAGGGAGCGGCAGCATTCAGGGGACATCAT
GCCAACTGCCAAGCAACTGGCTGACATTGGCTACAAGACCTTCTCCACCTCCATGATGCT
CCTCACCGTGTATGGGGGCTACCTCTGCAGCGTCCGGGCCTACCATTACTTCCAGCGGCG
CAGCTCCCGGCGCCAGGCTGCGGAAGAGCAGAAGACCTCGGGAGTCCCCTAGGAGCAGGG
ACGTTTTTCTTGAGCAGAGAGGCCTGAGGCATGCTATGGAAAGACCTCACCTGCAGTCAT
TTCTGAGTCAAGAGGACTAGAGCCTTAATGGTTTCTGAACTCTGCTGGGAGAAAGTGCCC
ATGTTTTTCTCTGGTGCCGTCAGTTTGGAGAGGCTGGCTGTCAAGTCACAGCAGGAATGG
GAGGGTGAGGCACACCTACAGACATTAAATGTTTTGCCCCGTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTGGAATGTTGGAGTTCCCAAACAGTATCTTCCATATATGTAGGGGCCATTCAGAACG
GAGTGCAGGCAGACTCAGCAGGATGCAGAAGTTATGGAACGGCCTTAAGGCTGCGTTGGG
GAGGTCGTGCGGCTGGAGGACTCGAACCCAGAGGGAGCGGCAGCATTCAGGGGACATCAT
GCCAACTGCCAAGCAACTGGCTGACATTGGCTACAAGACCTTCTCCACCTCCATGATGCT
CCTCACCGTGTATGGGGGCTACCTCTGCAGCGTCCGGGCCTACCATTACTTCCAGCGGCG
CAGCTCCCGGCGCCAGGCTGCGGAAGAGCAGAAGACCTCGGGAGTCCCCTAGGAGCAGGG
ACGTTTTTCTTGAGCAGAGAGGCCTGAGGCATGCTATGGAAAGACCTCACCTGCAGTCAT
TTCTGAGTCAAGAGGACTAGAGCCTTAATGGTTTCTGAACTCTGCTGGGAGAAAGTGCCC
ATGTTTTTCTCTGGTGCCGTCAGTTTGGAGAGGCTGGCTGTCAAGTCACAGCAGGAATGG
GAGGGTGAGGCACACCTACAGACATTAAATGTTTTGCCCCGTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|54038780|gb|AAH84716.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|54038780|gb|AAH84716.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               287-404, - strand, RNAz p=0.554616

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               287-404, - strand, RNAz p=0.554616

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               131-598, gnl|bosTau2|chr28 (16720633-16721100)
               

               
               131-598, gnl|Hg17|chr12 (48800084-48800500)
               

               
               131-598, gnl|Mm7|chr15 (99712888-99713287)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               131-598, gnl|bosTau2|chr28 (16720633-16721100)
               

               
               131-598, gnl|Hg17|chr12 (48800084-48800500)
               

               
               131-598, gnl|Mm7|chr15 (99712888-99713287)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               cki (0.495704)
               

               
               che (0.408942)
               

               
               ton (0.351)
               

               
               duo (0.345602)
               

               
               fhi (0.339155)
               

               
               nje (0.33184)
               

               
               sme (0.305437)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               fco (0.157208)
               

               
               cli (0.152812)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.495704)
               

               
               che (0.408942)
               

               
               ton (0.351)
               

               
               duo (0.345602)
               

               
               fhi (0.339155)
               

               
               nje (0.33184)
               

               
               sme (0.305437)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               fco (0.157208)
               

               
               cli (0.152812)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	131-598, gnl\|bosTau2\|chr28 (16720633-16721100)
	131-598, gnl\|Hg17\|chr12 (48800084-48800500)
	131-598, gnl\|Mm7\|chr15 (99712888-99713287)

	cki (0.495704)
	che (0.408942)
	ton (0.351)
	duo (0.345602)
	fhi (0.339155)
	nje (0.33184)
	sme (0.305437)
	hyp (0.285673)
	fce (0.271592)
	cbe (0.239234)
	ebs (0.236602)
	ece (0.229305)
	fbs (0.175346)
	cut (0.169924)
	fco (0.157208)
	cli (0.152812)
	ssp (0.13552)
	ese (0.126502)
	pgl (0.118483)
	jca (0.11396)
	jej (0.0989218)