Non-Coding RNA Search

Ss1.1-rebs07c_l10.5

Sequence:


               
               GGGGCGTGGCCCTGCCTTCTCCTTTCTCTGGTGACAGGTGCACCCTAGAGCTATCACCTG
GTATTTTGTTTTGTTTCTCTTGCAGAGTGAAAGAATTGAAAAAGGCCAAGGAACTTGAGG
ACCTACAGCAGCATCCCTTAGCAATGTGACACTGCTTTGCAGACTGTTTTCATTTCTGTT
TTTAGCAGAGACATGCAACAACAACAACAAAACACACACACACAACATGCACGCACGCAC
ATGCACACACGCGCACACACACACACACACACACACACACATAATCCCTCTGCAGTTTTG
GGGAGATCAGCTGCAGGATTTTAACAGGAATGTTTGGGTCATTGCATTTGCACTTTCATG
GACAACTTTTAATTTGATCAGCAAGACATCTTGGAACTCAATCTTCTGTTGGATCATGGG
AAAACAAGACACCACGCGGAACTGAAAGAGGCTTCCTCTTCTCCGGAAGAAGCCGTTTTC
CTTCTCACATAGGGCTGTATTCAAACATCGTGTGGAACTGTACAAATATTTATACCAAAA
ATATAGATAAGAAAAGGTGGGGATCCACTCGCAATGAAGAGGATGCTGTTCCTGCACCTG
TCACTTATTTCCAAGAAGCTGAATCTTTCGGGTTGGTTCTCAGTGGAGGGCTTAGACCAT
ACAAATCTTTATTGGATCCGTGTGTTCTCATTTCCTTCACTGTGTCTCTTTGATTCGAAT
GTGTTTGGGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCCGTTGATATGTTGTTTTAAT
CTCTACAGCACACTTAATGCAACTTGAAAAATCTGCAGGTGTAACGTCTTGTGGAGATTC
GAGGGGCGGGTAAACGGGTCATGCTCACGGACGTGGTAAGGAACAGCTTACAGAGGTTAA
ATTTCTTTTCCTGTCCCCACCACCTCCCAAGAACCTGCGAGGAGAGTCATCATCTGATCC
CTTTTCTCATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGCGTGGCCCTGCCTTCTCCTTTCTCTGGTGACAGGTGCACCCTAGAGCTATCACCTG
GTATTTTGTTTTGTTTCTCTTGCAGAGTGAAAGAATTGAAAAAGGCCAAGGAACTTGAGG
ACCTACAGCAGCATCCCTTAGCAATGTGACACTGCTTTGCAGACTGTTTTCATTTCTGTT
TTTAGCAGAGACATGCAACAACAACAACAAAACACACACACACAACATGCACGCACGCAC
ATGCACACACGCGCACACACACACACACACACACACACACATAATCCCTCTGCAGTTTTG
GGGAGATCAGCTGCAGGATTTTAACAGGAATGTTTGGGTCATTGCATTTGCACTTTCATG
GACAACTTTTAATTTGATCAGCAAGACATCTTGGAACTCAATCTTCTGTTGGATCATGGG
AAAACAAGACACCACGCGGAACTGAAAGAGGCTTCCTCTTCTCCGGAAGAAGCCGTTTTC
CTTCTCACATAGGGCTGTATTCAAACATCGTGTGGAACTGTACAAATATTTATACCAAAA
ATATAGATAAGAAAAGGTGGGGATCCACTCGCAATGAAGAGGATGCTGTTCCTGCACCTG
TCACTTATTTCCAAGAAGCTGAATCTTTCGGGTTGGTTCTCAGTGGAGGGCTTAGACCAT
ACAAATCTTTATTGGATCCGTGTGTTCTCATTTCCTTCACTGTGTCTCTTTGATTCGAAT
GTGTTTGGGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCCGTTGATATGTTGTTTTAAT
CTCTACAGCACACTTAATGCAACTTGAAAAATCTGCAGGTGTAACGTCTTGTGGAGATTC
GAGGGGCGGGTAAACGGGTCATGCTCACGGACGTGGTAAGGAACAGCTTACAGAGGTTAA
ATTTCTTTTCCTGTCCCCACCACCTCCCAAGAACCTGCGAGGAGAGTCATCATCTGATCC
CTTTTCTCATGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               7-124, - strand, RNAz p=0.659482

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               7-124, - strand, RNAz p=0.659482

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-257, gnl|bosTau2|chr16 (29855087-29855335)
               

               
               7-257, gnl|Hg17|chr1 (7760706-7760947)
               

               
               7-257, gnl|Mm7|chr4 (150052473-150052217)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-257, gnl|bosTau2|chr16 (29855087-29855335)
               

               
               7-257, gnl|Hg17|chr1 (7760706-7760947)
               

               
               7-257, gnl|Mm7|chr4 (150052473-150052217)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ebs (0.236602)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	7-257, gnl\|bosTau2\|chr16 (29855087-29855335)
	7-257, gnl\|Hg17\|chr1 (7760706-7760947)
	7-257, gnl\|Mm7\|chr4 (150052473-150052217)