Ss1.1-rebs08c_f18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGATAAAGATGACATTGAGACTCCAGTGGTAACTGAAGCAGCCCCCATCCTTGAAGATG AGAACTGTGAGCCAGCCAAGAATTCTGGGTCTCTTGATCTAAGTGCCAAGCCAGAGAGTA AATCAGAACCTGTAGTTTCTACTCGGAAAAGACCAGAGTTCAAACATTCCAGTGACCTTG AGACTTCAGAAGTTCTCCCTGTTCAGGCATCAGAGGCTGCAGGCAAAGAGGCTGTTTCCA AAGATGTACCCCAAACTGGATGGGGCTATTGGGGCAGTTGGGGCAAGTCCTTGCTCTCCT CAGCTTCAGCTACAGTTGCCACAGTAGGACAAGGTATTTCAAACGTCATTGAGAAAGCGG AGACTTCCCTTGGAATCCCTAGTCCCAGTGACATTTCAACTGAAGTCCAGTATGCAGCAG GAGAGACAAATGCCAAAGAGAGTGAAAACTCCTCTCCAGTGAGTGGGCCATTTGGGGTAT TCTCAACCATCTCTACTGCTGTTCAGAGCACAGGAAAGAGTGTTATCAGTGGGGGTTTGG ATGCCTTAGAATTCATTGGGAAAAAGACAATGGATGTAATAGCAGAAGGGGATCCTGGAT TTAAAAGAACCAAGGGTCTGATGAACCGGACTTCTACTCTGTCTCAGGTTTTAAGAGAGG TGAAGGAGAAAGAAGAGCTATGGACTTCCAATGAGGTAACCATAGAAACAGACAAGAAAA CTCATTATGGGTTACTCTTCGATGAATTTCAAGGCCTTTCACATCTAGAAGCTCTGGAGA TGCTCTCCCGAGAAAGTGAAATAAAGGTGAAATCTATTCTTAATTCTCTAAGTGGAGAAG AATTAGAGACTCTGAAACTTGAATTGGAGCAACTCAAAGAAGCCTTTTCCCTAGCAGAGT TCTGTGAGGAAGAGGAGGAAGAGACGAAAGGGGATGAAGACTTCACCAAAGAGATAACAG AGCTGTTTTCCCAGCTGCATGTCTCCTCCAAACCAGAGAAACTTGCCAGGGCAAGAAATA CAGCCTATGAATGGATTAGTACATCTCTGGCCAAACCATTAGAAAAGAAGGAAGAAGGAG AAAAACAGTTGGAAGCAGAAGAAGCTGAGCAAATCAGTAACAGTTCGATAGAGGATATCC ATGCGTTTGCAATCCGGAGTCTAGCAGAACTGACTGCCTGCTCAATTGAACTGTTTCACA AAATAGCAGCTCTGGTTCTGCATGGCCGGAAGCAGGAAGTATCAGCCATAGAAAGGAGCA GAGCCCTTTCCCAGATGACAGTTCTGCTCTGTAAAGAGTTGTCCTCTCTGTCTAAAGAGT TTACCACCTGCCTAACAACTGCTGGGGTCAAAGAAAAAGCAGATGTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGATAAAGATGACATTGAGACTCCAGTGGTAACTGAAGCAGCCCCCATCCTTGAAGATG AGAACTGTGAGCCAGCCAAGAATTCTGGGTCTCTTGATCTAAGTGCCAAGCCAGAGAGTA AATCAGAACCTGTAGTTTCTACTCGGAAAAGACCAGAGTTCAAACATTCCAGTGACCTTG AGACTTCAGAAGTTCTCCCTGTTCAGGCATCAGAGGCTGCAGGCAAAGAGGCTGTTTCCA AAGATGTACCCCAAACTGGATGGGGCTATTGGGGCAGTTGGGGCAAGTCCTTGCTCTCCT CAGCTTCAGCTACAGTTGCCACAGTAGGACAAGGTATTTCAAACGTCATTGAGAAAGCGG AGACTTCCCTTGGAATCCCTAGTCCCAGTGACATTTCAACTGAAGTCCAGTATGCAGCAG GAGAGACAAATGCCAAAGAGAGTGAAAACTCCTCTCCAGTGAGTGGGCCATTTGGGGTAT TCTCAACCATCTCTACTGCTGTTCAGAGCACAGGAAAGAGTGTTATCAGTGGGGGTTTGG ATGCCTTAGAATTCATTGGGAAAAAGACAATGGATGTAATAGCAGAAGGGGATCCTGGAT TTAAAAGAACCAAGGGTCTGATGAACCGGACTTCTACTCTGTCTCAGGTTTTAAGAGAGG TGAAGGAGAAAGAAGAGCTATGGACTTCCAATGAGGTAACCATAGAAACAGACAAGAAAA CTCATTATGGGTTACTCTTCGATGAATTTCAAGGCCTTTCACATCTAGAAGCTCTGGAGA TGCTCTCCCGAGAAAGTGAAATAAAGGTGAAATCTATTCTTAATTCTCTAAGTGGAGAAG AATTAGAGACTCTGAAACTTGAATTGGAGCAACTCAAAGAAGCCTTTTCCCTAGCAGAGT TCTGTGAGGAAGAGGAGGAAGAGACGAAAGGGGATGAAGACTTCACCAAAGAGATAACAG AGCTGTTTTCCCAGCTGCATGTCTCCTCCAAACCAGAGAAACTTGCCAGGGCAAGAAATA CAGCCTATGAATGGATTAGTACATCTCTGGCCAAACCATTAGAAAAGAAGGAAGAAGGAG AAAAACAGTTGGAAGCAGAAGAAGCTGAGCAAATCAGTAACAGTTCGATAGAGGATATCC ATGCGTTTGCAATCCGGAGTCTAGCAGAACTGACTGCCTGCTCAATTGAACTGTTTCACA AAATAGCAGCTCTGGTTCTGCATGGCCGGAAGCAGGAAGTATCAGCCATAGAAAGGAGCA GAGCCCTTTCCCAGATGACAGTTCTGCTCTGTAAAGAGTTGTCCTCTCTGTCTAAAGAGT TTACCACCTGCCTAACAACTGCTGGGGTCAAAGAAAAAGCAGATGTCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1-120, - strand, RNAz p=0.967626 | |
| 1124-1242, - strand, RNAz p=0.62634 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-120, - strand, RNAz p=0.967626 | |
| 1124-1242, - strand, RNAz p=0.62634 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 1-228, gnl|bosTau2|chr7 (43962884-43962660) | |
| 1-228, gnl|Hg17|chr5 (153394702-153394475) | |
| 1-228, gnl|Mm7|chr11 (57595815-57595618) | |
| 313-421, gnl|bosTau2|chr7 (43961870-43961762) | |
| 313-421, gnl|Hg17|chr5 (153393650-153393543) | |
| 313-421, gnl|Mm7|chr11 (57594894-57594786) | |
| 637-808, gnl|bosTau2|chr7 (43956861-43956690) | |
| 637-808, gnl|canFam2|chr3 (76277850-76277687) | |
| 637-808, gnl|canFam2|chr4 (58841516-58841288) | |
| 637-808, gnl|danRer3|chr1 (14501464-14501301) | |
| 637-808, gnl|danRer3|chr21 (34884248-34884045) | |
| 637-808, gnl|dasNov1|scaffold_1072 (109345-109182) | |
| 637-808, gnl|dasNov1|scaffold_4608 (129353-129126) | |
| 637-808, gnl|echTel1|scaffold_305489 (40926-41153) | |
| 637-808, gnl|echTel1|scaffold_323131 (46056-46219) | |
| 637-808, gnl|fr1|chrUn (253069377-253069211) | |
| 637-808, gnl|fr1|chrUn (54924949-54925133) | |
| 637-808, gnl|galGal2|chr13 (11232830-11232608) | |
| 637-808, gnl|galGal2|chrUn (134722813-134722976) | |
| 637-808, gnl|hg17|chr4 (38739101-38739264) | |
| 637-808, gnl|hg17|chr5 (153386925-153387152) | |
| 637-808, gnl|Hg17|chr5 (153387097-153386927) | |
| 637-808, gnl|loxAfr1|scaffold_114627 (146-4) | |
| 637-808, gnl|loxAfr1|scaffold_21433 (6179-5952) | |
| 637-808, gnl|mm7|chr11 (57588378-57588605) | |
| 637-808, gnl|Mm7|chr11 (57588550-57588380) | |
| 637-808, gnl|mm7|chr5 (64370121-64370283) | |
| 637-808, gnl|monDom2|scaffold_26 (3839327-3839490) | |
| 637-808, gnl|monDom2|scaffold_6 (52250659-52250439) | |
| 637-808, gnl|oryCun1|scaffold_181647 (84629-84466) | |
| 637-808, gnl|oryCun1|scaffold_199397 (13034-13261) | |
| 637-808, gnl|panTro1|chr3 (41416744-41416907) | |
| 637-808, gnl|panTro1|chr4 (160306021-160306248) | |
| 637-808, gnl|rheMac2|chr5 (33884693-33884856) | |
| 637-808, gnl|rheMac2|chr6 (150394607-150394834) | |
| 637-808, gnl|rn3|chr10 (43107696-43107923) | |
| 637-808, gnl|rn3|chr14 (46021768-46021606) | |
| 637-808, gnl|tetNig1|chr7 (10574818-10574629) | |
| 637-808, gnl|tetNig1|chrUn_random (51213763-51213925) | |
| 637-808, gnl|xenTro1|scaffold_152 (1122193-1122355) | |
| 1124-1274, gnl|bosTau2|chr7 (43943478-43943328) | |
| 1124-1274, gnl|Hg17|chr5 (153362154-153362003) | |
| 1124-1274, gnl|Mm7|chr11 (57573609-57573464) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-228, gnl|bosTau2|chr7 (43962884-43962660) | |
| 1-228, gnl|Hg17|chr5 (153394702-153394475) | |
| 1-228, gnl|Mm7|chr11 (57595815-57595618) | |
| 313-421, gnl|bosTau2|chr7 (43961870-43961762) | |
| 313-421, gnl|Hg17|chr5 (153393650-153393543) | |
| 313-421, gnl|Mm7|chr11 (57594894-57594786) | |
| 637-808, gnl|bosTau2|chr7 (43956861-43956690) | |
| 637-808, gnl|canFam2|chr3 (76277850-76277687) | |
| 637-808, gnl|canFam2|chr4 (58841516-58841288) | |
| 637-808, gnl|danRer3|chr1 (14501464-14501301) | |
| 637-808, gnl|danRer3|chr21 (34884248-34884045) | |
| 637-808, gnl|dasNov1|scaffold_1072 (109345-109182) | |
| 637-808, gnl|dasNov1|scaffold_4608 (129353-129126) | |
| 637-808, gnl|echTel1|scaffold_305489 (40926-41153) | |
| 637-808, gnl|echTel1|scaffold_323131 (46056-46219) | |
| 637-808, gnl|fr1|chrUn (253069377-253069211) | |
| 637-808, gnl|fr1|chrUn (54924949-54925133) | |
| 637-808, gnl|galGal2|chr13 (11232830-11232608) | |
| 637-808, gnl|galGal2|chrUn (134722813-134722976) | |
| 637-808, gnl|hg17|chr4 (38739101-38739264) | |
| 637-808, gnl|hg17|chr5 (153386925-153387152) | |
| 637-808, gnl|Hg17|chr5 (153387097-153386927) | |
| 637-808, gnl|loxAfr1|scaffold_114627 (146-4) | |
| 637-808, gnl|loxAfr1|scaffold_21433 (6179-5952) | |
| 637-808, gnl|mm7|chr11 (57588378-57588605) | |
| 637-808, gnl|Mm7|chr11 (57588550-57588380) | |
| 637-808, gnl|mm7|chr5 (64370121-64370283) | |
| 637-808, gnl|monDom2|scaffold_26 (3839327-3839490) | |
| 637-808, gnl|monDom2|scaffold_6 (52250659-52250439) | |
| 637-808, gnl|oryCun1|scaffold_181647 (84629-84466) | |
| 637-808, gnl|oryCun1|scaffold_199397 (13034-13261) | |
| 637-808, gnl|panTro1|chr3 (41416744-41416907) | |
| 637-808, gnl|panTro1|chr4 (160306021-160306248) | |
| 637-808, gnl|rheMac2|chr5 (33884693-33884856) | |
| 637-808, gnl|rheMac2|chr6 (150394607-150394834) | |
| 637-808, gnl|rn3|chr10 (43107696-43107923) | |
| 637-808, gnl|rn3|chr14 (46021768-46021606) | |
| 637-808, gnl|tetNig1|chr7 (10574818-10574629) | |
| 637-808, gnl|tetNig1|chrUn_random (51213763-51213925) | |
| 637-808, gnl|xenTro1|scaffold_152 (1122193-1122355) | |
| 1124-1274, gnl|bosTau2|chr7 (43943478-43943328) | |
| 1124-1274, gnl|Hg17|chr5 (153362154-153362003) | |
| 1124-1274, gnl|Mm7|chr11 (57573609-57573464) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| ill (0.175593) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| ebs (0.118301) | |
| cty (0.10408) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.175593) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| ebs (0.118301) | |
| cty (0.10408) |