Ss1.1-rebs08c_k20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATTTCCCCCTTGAGATCACTTATAGTAGATCAAGTCCAAAAGCTGACTTCCTTGGATAT TCCAGCTACATATCTGACAGGTGATAAGACTGACTCCGAAGCTACAAGTATTTACCTCCA GTTATCAAAAAAAGACCCAATTATAAAACTTCTATATGTCACTCCAGAGAAGGTCTGTGC AAGTAACAGACTGATTTCTACTCTGGAGAATCTGTACAACAGGAAGCTCTTGGCACGTTT TGTTATTGATGAAGCACATTGTGTCAGTCAGTGGGGACATGATTTTCGTCCAGACTACAA AAGAATGAATATGCTGCGCCAGAAGTTTCCCTCTGTTCCAGTGATGGCGCTTACAGCCAC TGCCAATCCCAGGGTGCAGAAGGACATCCTCACTCAGCTGAAGATTCTCAGACCTCAGGT GTTTACCATGAGCTTTAACAGACATAATCTAAAATACTATGTGTTACCCAAAAAACCTAA AAAGGTGGCTTTTGATTGCTTAGAATGGATCAGAAAGCATCACCCACATGACTCAGGGAT AATTTACTGCCTCTCCAGGCGAGAATGTGACACAATGGCTGACACATTACAGAAAGATGG TCTCGCTGCTCTGGCTTATCATGCTGGTCTCAGTGACTCTGCCAGAGATGAAGTACAGCA CAAGTGGATTAATCAGGATGGCTGCCAGGTTATCTGTGCAACAATTGCCTTTGGAATGGG GATTGACAAGCCTGATGTGCGATTTGTGATCCACGCATCCCTCCCTAAATCTGTGGAGGG TTACTACCAAGAATCTGGCAGAGCTGGAAGAGATGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATTTCCCCCTTGAGATCACTTATAGTAGATCAAGTCCAAAAGCTGACTTCCTTGGATAT TCCAGCTACATATCTGACAGGTGATAAGACTGACTCCGAAGCTACAAGTATTTACCTCCA GTTATCAAAAAAAGACCCAATTATAAAACTTCTATATGTCACTCCAGAGAAGGTCTGTGC AAGTAACAGACTGATTTCTACTCTGGAGAATCTGTACAACAGGAAGCTCTTGGCACGTTT TGTTATTGATGAAGCACATTGTGTCAGTCAGTGGGGACATGATTTTCGTCCAGACTACAA AAGAATGAATATGCTGCGCCAGAAGTTTCCCTCTGTTCCAGTGATGGCGCTTACAGCCAC TGCCAATCCCAGGGTGCAGAAGGACATCCTCACTCAGCTGAAGATTCTCAGACCTCAGGT GTTTACCATGAGCTTTAACAGACATAATCTAAAATACTATGTGTTACCCAAAAAACCTAA AAAGGTGGCTTTTGATTGCTTAGAATGGATCAGAAAGCATCACCCACATGACTCAGGGAT AATTTACTGCCTCTCCAGGCGAGAATGTGACACAATGGCTGACACATTACAGAAAGATGG TCTCGCTGCTCTGGCTTATCATGCTGGTCTCAGTGACTCTGCCAGAGATGAAGTACAGCA CAAGTGGATTAATCAGGATGGCTGCCAGGTTATCTGTGCAACAATTGCCTTTGGAATGGG GATTGACAAGCCTGATGTGCGATTTGTGATCCACGCATCCCTCCCTAAATCTGTGGAGGG TTACTACCAAGAATCTGGCAGAGCTGGAAGAGATGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 305-422, - strand, RNAz p=0.747525 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 305-422, - strand, RNAz p=0.747525 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 59-178, gnl|bosTau2|chr21 (12287264-12287145) | |
| 59-178, gnl|Hg17|chr15 (89111144-89111263) | |
| 59-178, gnl|Mm7|chr7 (76367546-76367427) | |
| 270-422, gnl|bosTau2|chr21 (12284006-12283854) | |
| 270-422, gnl|Hg17|chr15 (89113670-89113822) | |
| 270-422, gnl|Mm7|chr7 (76365695-76365543) | |
| 525-690, gnl|bosTau2|chr21 (12272110-12271945) | |
| 525-690, gnl|canFam2|chr3 (56300458-56300264) | |
| 525-690, gnl|danRer3|chrUn (61002651-61002470) | |
| 525-690, gnl|dasNov1|scaffold_15311 (5630-5441) | |
| 525-690, gnl|fr1|chrUn (244887433-244887612) | |
| 525-690, gnl|galGal2|chr10 (20527501-20527307) | |
| 525-690, gnl|hg17|chr15 (89129141-89129333) | |
| 525-690, gnl|Hg17|chr15 (89129152-89129317) | |
| 525-690, gnl|mm7|chr7 (76351956-76351762) | |
| 525-690, gnl|Mm7|chr7 (76351941-76351776) | |
| 525-690, gnl|monDom2|scaffold_45 (9759763-9759949) | |
| 525-690, gnl|oryCun1|scaffold_90716 (4294-4487) | |
| 525-690, gnl|panTro1|chr16 (90077596-90077788) | |
| 525-690, gnl|rheMac2|chr7 (70501275-70501467) | |
| 525-690, gnl|rn3|chr1 (136379023-136378829) | |
| 525-690, gnl|tetNig1|chr13 (2259837-2259662) | |
| 525-690, gnl|xenTro1|scaffold_5 (928759-928567) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 59-178, gnl|bosTau2|chr21 (12287264-12287145) | |
| 59-178, gnl|Hg17|chr15 (89111144-89111263) | |
| 59-178, gnl|Mm7|chr7 (76367546-76367427) | |
| 270-422, gnl|bosTau2|chr21 (12284006-12283854) | |
| 270-422, gnl|Hg17|chr15 (89113670-89113822) | |
| 270-422, gnl|Mm7|chr7 (76365695-76365543) | |
| 525-690, gnl|bosTau2|chr21 (12272110-12271945) | |
| 525-690, gnl|canFam2|chr3 (56300458-56300264) | |
| 525-690, gnl|danRer3|chrUn (61002651-61002470) | |
| 525-690, gnl|dasNov1|scaffold_15311 (5630-5441) | |
| 525-690, gnl|fr1|chrUn (244887433-244887612) | |
| 525-690, gnl|galGal2|chr10 (20527501-20527307) | |
| 525-690, gnl|hg17|chr15 (89129141-89129333) | |
| 525-690, gnl|Hg17|chr15 (89129152-89129317) | |
| 525-690, gnl|mm7|chr7 (76351956-76351762) | |
| 525-690, gnl|Mm7|chr7 (76351941-76351776) | |
| 525-690, gnl|monDom2|scaffold_45 (9759763-9759949) | |
| 525-690, gnl|oryCun1|scaffold_90716 (4294-4487) | |
| 525-690, gnl|panTro1|chr16 (90077596-90077788) | |
| 525-690, gnl|rheMac2|chr7 (70501275-70501467) | |
| 525-690, gnl|rn3|chr1 (136379023-136378829) | |
| 525-690, gnl|tetNig1|chr13 (2259837-2259662) | |
| 525-690, gnl|xenTro1|scaffold_5 (928759-928567) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) | |
| ebs (0.118301) |