Non-Coding RNA Search

Ss1.1-rebs10c_a14.5

Sequence:


               
               GTCCCTCAAGGTCTTGAAATCAAAGGTTCTACGCAAGTGCAAAGTTTTATAGTTATTTAT
ATTGGCTGATTACTATTAATTTTTTCCCCTCTGTTGTCTCAAGCGTATGCACTGATTGCA
GAGATGTTTTGCATTCAAAACACCCCAGATCGCTTTGAAAGGAGCCGAGCGAACCACAGA
CTATCTTCAAGTCTCCATCCCTGCTCCACCACAACTCCCTCTCTTCCTCATGCTCTTGTA
ATTTTCAGAAAAGGGGCATCGTTGTTCTGCAATGTAAAGATCACAGGATAGGACCTGCCA
TCAAATGCGTTAAGAACTACAACGGGAGTGGTGGTGATACACCTAACTCTCCAGCCCAAA
CTCAGTCTGACAGTTGTTTCCATTTATATATCCTGTTTAATAGTTTTCCGAACACTTTTC
ACATATGGTGGCACATCGTTCCCATTTTTTTACAGGTGAGGACATTGAGATGCAGAGAAA
TTAAACATGCTAGAACTCTCCAGGCACCTCTGGGACTTAATCTGGGTCCTCTTACCCTCA
AACATATACAAACACACAGTCCAGGAAAGCAAGCACGCTAACAAATTCCTAAAGCAGAAT
ATGAGGTTGGAAGAGCAGAATGCAATATGTGAGATGACAAGCAGTTGAGATGTCATGCTG
TGTAATCGTGATCACGGCTTCAGCTAAATTCTTGTCCCCTACCCTGGCATCATCAGGCTT
CTTTAGAGAGCATTTGGAACTATGCTATAAAAGATTATATCAGCATTCATATTATGTGCT
CCCATGGGCGCTCCCTGTGGTGTTTCCATATATCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCCTCAAGGTCTTGAAATCAAAGGTTCTACGCAAGTGCAAAGTTTTATAGTTATTTAT
ATTGGCTGATTACTATTAATTTTTTCCCCTCTGTTGTCTCAAGCGTATGCACTGATTGCA
GAGATGTTTTGCATTCAAAACACCCCAGATCGCTTTGAAAGGAGCCGAGCGAACCACAGA
CTATCTTCAAGTCTCCATCCCTGCTCCACCACAACTCCCTCTCTTCCTCATGCTCTTGTA
ATTTTCAGAAAAGGGGCATCGTTGTTCTGCAATGTAAAGATCACAGGATAGGACCTGCCA
TCAAATGCGTTAAGAACTACAACGGGAGTGGTGGTGATACACCTAACTCTCCAGCCCAAA
CTCAGTCTGACAGTTGTTTCCATTTATATATCCTGTTTAATAGTTTTCCGAACACTTTTC
ACATATGGTGGCACATCGTTCCCATTTTTTTACAGGTGAGGACATTGAGATGCAGAGAAA
TTAAACATGCTAGAACTCTCCAGGCACCTCTGGGACTTAATCTGGGTCCTCTTACCCTCA
AACATATACAAACACACAGTCCAGGAAAGCAAGCACGCTAACAAATTCCTAAAGCAGAAT
ATGAGGTTGGAAGAGCAGAATGCAATATGTGAGATGACAAGCAGTTGAGATGTCATGCTG
TGTAATCGTGATCACGGCTTCAGCTAAATTCTTGTCCCCTACCCTGGCATCATCAGGCTT
CTTTAGAGAGCATTTGGAACTATGCTATAAAAGATTATATCAGCATTCATATTATGTGCT
CCCATGGGCGCTCCCTGTGGTGTTTCCATATATCCA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               2-541, gnl|bosTau2|chr8 (43345611-43346140)
               

               
               2-541, gnl|Hg17|chr9 (84868520-84869057)
               

               
               2-541, gnl|Mm7|chr13 (58225678-58226146)
               


               
               543-813, gnl|bosTau2|chr8 (43346169-43346441)
               

               
               543-813, gnl|Hg17|chr9 (84869086-84869373)
               

               
               543-813, gnl|Mm7|chr13 (58226169-58226427)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-541, gnl|bosTau2|chr8 (43345611-43346140)
               

               
               2-541, gnl|Hg17|chr9 (84868520-84869057)
               

               
               2-541, gnl|Mm7|chr13 (58225678-58226146)
               


               
               543-813, gnl|bosTau2|chr8 (43346169-43346441)
               

               
               543-813, gnl|Hg17|chr9 (84869086-84869373)
               

               
               543-813, gnl|Mm7|chr13 (58226169-58226427)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.236602)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)

	2-541, gnl\|bosTau2\|chr8 (43345611-43346140)
	2-541, gnl\|Hg17\|chr9 (84868520-84869057)
	2-541, gnl\|Mm7\|chr13 (58225678-58226146)

	543-813, gnl\|bosTau2\|chr8 (43346169-43346441)
	543-813, gnl\|Hg17\|chr9 (84869086-84869373)
	543-813, gnl\|Mm7\|chr13 (58226169-58226427)