Non-Coding RNA Search

Ss1.1-rebs10c_a2.5

Sequence:


               
               GTCCCATCCCGGTCCACATCATGGGTTTCGCTGTCTCCCCCATCCCGCTCTGAGGGCACA
CGCATTACCCTGCAGGCTCCCCCATGGGAATGGGAGCAGTGAGGCCCCCAACTCCTCCCC
CTCCCCACTGCTAAATTATGTTGTCTGGGAGATGGCTTTTGGGGAGTCACTTGCTGCACC
ACATGAGAAAGGGGCTCCCGTTTGCCCTCCCCTGGCTCCTTAGTCCCTGTCTTGTCTGTC
TTGGCTATCCGTGTATGTCACTCTGGAATTCAGAGCAACCCTCGCCCCAGTCCTCCACTT
CCCAGCCTCCCTGAGGGCCTCCCTAACTCCACCTAGGCTGCCAGGGGACTGGAGCCAGCT
GGTTCAAGGCCATCGGGAGCTCTGCCTCCCAATTTCCCCCTCTCTGCCCCCCTCCCTCCC
TGGTTCCTCTGCTCTCCCTCCTCTCACCCCCACCCCTGAGGTCTGTCCCGACTTCTCACA
GCTTTCCCACCTTCCTTCTTGCCTCTCTTACCTGGCTCCTATGCTGTGATATATATTTTT
GTATTATCTCTTTCTTCTTGTGGTGATAATCTTGAATTCTTGTGGGATGTAAGTTTCAAA
AAAAATTTTCAAATAAAGCCTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCCATCCCGGTCCACATCATGGGTTTCGCTGTCTCCCCCATCCCGCTCTGAGGGCACA
CGCATTACCCTGCAGGCTCCCCCATGGGAATGGGAGCAGTGAGGCCCCCAACTCCTCCCC
CTCCCCACTGCTAAATTATGTTGTCTGGGAGATGGCTTTTGGGGAGTCACTTGCTGCACC
ACATGAGAAAGGGGCTCCCGTTTGCCCTCCCCTGGCTCCTTAGTCCCTGTCTTGTCTGTC
TTGGCTATCCGTGTATGTCACTCTGGAATTCAGAGCAACCCTCGCCCCAGTCCTCCACTT
CCCAGCCTCCCTGAGGGCCTCCCTAACTCCACCTAGGCTGCCAGGGGACTGGAGCCAGCT
GGTTCAAGGCCATCGGGAGCTCTGCCTCCCAATTTCCCCCTCTCTGCCCCCCTCCCTCCC
TGGTTCCTCTGCTCTCCCTCCTCTCACCCCCACCCCTGAGGTCTGTCCCGACTTCTCACA
GCTTTCCCACCTTCCTTCTTGCCTCTCTTACCTGGCTCCTATGCTGTGATATATATTTTT
GTATTATCTCTTTCTTCTTGTGGTGATAATCTTGAATTCTTGTGGGATGTAAGTTTCAAA
AAAAATTTTCAAATAAAGCCTTTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               114-229, - strand, RNAz p=0.598842
               

               
               266-442, - strand, RNAz p=0.871641

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               114-229, - strand, RNAz p=0.598842
               

               
               266-442, - strand, RNAz p=0.871641

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               77-624, gnl|bosTau2|chr5 (61417940-61417375)
               

               
               77-624, gnl|Hg17|chr12 (6673806-6673225)
               

               
               77-624, gnl|Mm7|chr6 (125028206-125028715)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               77-624, gnl|bosTau2|chr5 (61417940-61417375)
               

               
               77-624, gnl|Hg17|chr12 (6673806-6673225)
               

               
               77-624, gnl|Mm7|chr6 (125028206-125028715)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	114-229, - strand, RNAz p=0.598842
	266-442, - strand, RNAz p=0.871641

	77-624, gnl\|bosTau2\|chr5 (61417940-61417375)
	77-624, gnl\|Hg17\|chr12 (6673806-6673225)
	77-624, gnl\|Mm7\|chr6 (125028206-125028715)

	fce (0.271592)
	ece (0.229305)
	fcc (0.197785)
	hyp (0.142837)
	ebs (0.118301)
	ecc (0.115035)