Non-Coding RNA Search

Ss1.1-rebs10c_g7.5

Sequence:


               
               GGTGGTCTGGAAGCAATGAATAGCATGGGAGGATTGGAGGAGTGGGCCGAATGGGAGAGC
TATATCGTGGTGCGATGACCAGTAGCATGGAGAGAGATTTTGGACGTGGTGATATTGGAA
TAAATCGAGGCTTTGGAGATTCCTTTGGTAGAATTGGCAGTGCAATGATTGGAGGGTTTG
CAGGAAGAATAGGAGCTTCTAACATGGGTCCAGTAGGATCTGGAATAAGTGGTGGAATGG
GTGGCATGAACAGTGTGACTGGAGGAATGGGGATGGGACTGGATCGGATGAGTTCCAGCT
TTGATAGAATGGGACCAGGTATAGGAGCTATACTGGAAAGGAGCATCGATATGGATCGAG
GATTTTTATCGGGTCCAATGGGAAGCGGAATGAGAGAAAGAATAGGCTCCAAAGGCAACC
AGATATTTGTCAGAAATCTGCCTTTTGACTTGACTTGGCAGAAACTAAAAGAAAAATTCA
GTCAGTGTGGTCATGTAATGTTTGCAGAAATAAAAATGGAGAATGGAAAGTCAAAAGGCT
GTGGAACAGTCCGATTTGACTCCCCAGAATCAGCTGAAAAAGCCTGCAGAATAATGAATG
GCATAAAAATCAGTGGCAGAGAAATTGATGTTCGCTTGGATCGTAATGCATAATTTGAAA
CCACGGTTGGAACATTCTTACATCTGTTTTGCTGAATCTCCTAGTAAAAGTCATTTTTAA
AGTAATACTGTATGCTTATAGAAGTTGTAAAGATGAACTTTTAAAACTCCCACCAGCTTT
TAACAGTATAGTGTTAAATATACTGTGATTTTGGTTAATCTCAAGTTAGGGTTTTAAAGA
CAGCAAGTCTGGTCATTCAGTTTAAATGAATGGTTATACTATTTTTAATGAAATAAGCCA
TTTTCTTGTTATTTTCAGTTCTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGGTCTGGAAGCAATGAATAGCATGGGAGGATTGGAGGAGTGGGCCGAATGGGAGAGC
TATATCGTGGTGCGATGACCAGTAGCATGGAGAGAGATTTTGGACGTGGTGATATTGGAA
TAAATCGAGGCTTTGGAGATTCCTTTGGTAGAATTGGCAGTGCAATGATTGGAGGGTTTG
CAGGAAGAATAGGAGCTTCTAACATGGGTCCAGTAGGATCTGGAATAAGTGGTGGAATGG
GTGGCATGAACAGTGTGACTGGAGGAATGGGGATGGGACTGGATCGGATGAGTTCCAGCT
TTGATAGAATGGGACCAGGTATAGGAGCTATACTGGAAAGGAGCATCGATATGGATCGAG
GATTTTTATCGGGTCCAATGGGAAGCGGAATGAGAGAAAGAATAGGCTCCAAAGGCAACC
AGATATTTGTCAGAAATCTGCCTTTTGACTTGACTTGGCAGAAACTAAAAGAAAAATTCA
GTCAGTGTGGTCATGTAATGTTTGCAGAAATAAAAATGGAGAATGGAAAGTCAAAAGGCT
GTGGAACAGTCCGATTTGACTCCCCAGAATCAGCTGAAAAAGCCTGCAGAATAATGAATG
GCATAAAAATCAGTGGCAGAGAAATTGATGTTCGCTTGGATCGTAATGCATAATTTGAAA
CCACGGTTGGAACATTCTTACATCTGTTTTGCTGAATCTCCTAGTAAAAGTCATTTTTAA
AGTAATACTGTATGCTTATAGAAGTTGTAAAGATGAACTTTTAAAACTCCCACCAGCTTT
TAACAGTATAGTGTTAAATATACTGTGATTTTGGTTAATCTCAAGTTAGGGTTTTAAAGA
CAGCAAGTCTGGTCATTCAGTTTAAATGAATGGTTATACTATTTTTAATGAAATAAGCCA
TTTTCTTGTTATTTTCAGTTCTAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5FVH6_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5FVH6_RAT

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               268-437, - strand, RNAz p=0.946451
               

               
               489-607, - strand, RNAz p=0.993884
               

               
               726-816, - strand, RNAz p=0.593632

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               268-437, - strand, RNAz p=0.946451
               

               
               489-607, - strand, RNAz p=0.993884
               

               
               726-816, - strand, RNAz p=0.593632

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               489-607, DB728056 RIKEN full-length enriched human cDNA library, testis Homo 
(dbj|DB728056.1|), blast E-value=0, identity=99.16% 
               

               
               489-607, 601471983F1 NIH_MGC_67 Homo sapiens cDNA clone IMAGE (gb|BE782798.1|), 
blast E-value=0, identity=99.16% 
               

               
               489-607, 602043031F1 NCI_CGAP_Brn67 Homo sapiens cDNA clone IMAGE 
(gb|BF528254.1|), blast E-value=0, identity=99.16% 
               

               
               489-607, 602279731F1 NIH_MGC_86 Homo sapiens cDNA clone IMAGE (gb|BG110109.1|), 
blast E-value=0, identity=99.16% 
               

               
               489-607, AGENCOURT_13444224 NIH_MGC_187 Homo sapiens cDNA clone 
(gb|CB962412.1|), blast E-value=0, identity=99.16% 
               

               
               489-607, HESC2_27_A01.g1_A035 NIH_MGC_258 Homo sapiens cDNA clone 
(gb|CX165295.1|), blast E-value=0, identity=99.16%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               489-607, DB728056 RIKEN full-length enriched human cDNA library, testis Homo 
(dbj|DB728056.1|), blast E-value=0, identity=99.16% 
               

               
               489-607, 601471983F1 NIH_MGC_67 Homo sapiens cDNA clone IMAGE (gb|BE782798.1|), 
blast E-value=0, identity=99.16% 
               

               
               489-607, 602043031F1 NCI_CGAP_Brn67 Homo sapiens cDNA clone IMAGE 
(gb|BF528254.1|), blast E-value=0, identity=99.16% 
               

               
               489-607, 602279731F1 NIH_MGC_86 Homo sapiens cDNA clone IMAGE (gb|BG110109.1|), 
blast E-value=0, identity=99.16% 
               

               
               489-607, AGENCOURT_13444224 NIH_MGC_187 Homo sapiens cDNA clone 
(gb|CB962412.1|), blast E-value=0, identity=99.16% 
               

               
               489-607, HESC2_27_A01.g1_A035 NIH_MGC_258 Homo sapiens cDNA clone 
(gb|CX165295.1|), blast E-value=0, identity=99.16%

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               229-437, gnl|bosTau2|chr10 (43055968-43056176)
               

               
               229-437, gnl|Hg17|chr15 (46228860-46228652)
               

               
               229-437, gnl|Mm7|chr2 (124836973-124836765)
               


               
               489-922, gnl|bosTau2|chr10 (43063709-43064148)
               

               
               489-922, gnl|Hg17|chr15 (46222561-46222123)
               

               
               489-922, gnl|Mm7|chr2 (124829891-124829430)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               229-437, gnl|bosTau2|chr10 (43055968-43056176)
               

               
               229-437, gnl|Hg17|chr15 (46228860-46228652)
               

               
               229-437, gnl|Mm7|chr2 (124836973-124836765)
               


               
               489-922, gnl|bosTau2|chr10 (43063709-43064148)
               

               
               489-922, gnl|Hg17|chr15 (46222561-46222123)
               

               
               489-922, gnl|Mm7|chr2 (124829891-124829430)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               spl (0.286369)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.286369)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

	268-437, - strand, RNAz p=0.946451
	489-607, - strand, RNAz p=0.993884
	726-816, - strand, RNAz p=0.593632

	489-607, DB728056 RIKEN full-length enriched human cDNA library, testis Homo (dbj\|DB728056.1\|), blast E-value=0, identity=99.16%
	489-607, 601471983F1 NIH_MGC_67 Homo sapiens cDNA clone IMAGE (gb\|BE782798.1\|), blast E-value=0, identity=99.16%
	489-607, 602043031F1 NCI_CGAP_Brn67 Homo sapiens cDNA clone IMAGE (gb\|BF528254.1\|), blast E-value=0, identity=99.16%
	489-607, 602279731F1 NIH_MGC_86 Homo sapiens cDNA clone IMAGE (gb\|BG110109.1\|), blast E-value=0, identity=99.16%
	489-607, AGENCOURT_13444224 NIH_MGC_187 Homo sapiens cDNA clone (gb\|CB962412.1\|), blast E-value=0, identity=99.16%
	489-607, HESC2_27_A01.g1_A035 NIH_MGC_258 Homo sapiens cDNA clone (gb\|CX165295.1\|), blast E-value=0, identity=99.16%

	229-437, gnl\|bosTau2\|chr10 (43055968-43056176)
	229-437, gnl\|Hg17\|chr15 (46228860-46228652)
	229-437, gnl\|Mm7\|chr2 (124836973-124836765)

	489-922, gnl\|bosTau2\|chr10 (43063709-43064148)
	489-922, gnl\|Hg17\|chr15 (46222561-46222123)
	489-922, gnl\|Mm7\|chr2 (124829891-124829430)