Non-Coding RNA Search

Ss1.1-rebs11c_g5.5

Sequence:


               
               GCACTATGCTTT------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------CTTTTTAATCCTCACTTTGTTAGATACAGAACATTT
CCCTCCATTTAGCCATAGGAAACTCATTTTTAAATGGTTTCGACAAGAGAACATGGCTAG
TTGGATAAAATATGGATTTGGGGGGGGGGCAGGTGTCATTCACATCTCTATCTGATTTTT
CACTTTTCCGATCATTGTTTCTACATTTCTGTAGATTATGTCCCTTATGTCAATGCTGTT
GATTCAAGGTGGAGTTCATATGGTAACGAGGCTACATCATCAGCACACTATATTGAACGA
TTCATTGTTACTGATTTATCTGGTCATAGGAAGCATTCCAGTACTGGAGATCTTTTAAGC
ATTGAACTTCAGCAGGCCAAGAGTAACTCTTTGCTTCTTCAGAGGGAGGCCAATGCTCTG
GCCATGCAACAGAAGTGGAATTCCCTGGATGAAGGCCGTCACCTTACCTTAAATCTTCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACTATGCTTT------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------CTTTTTAATCCTCACTTTGTTAGATACAGAACATTT
CCCTCCATTTAGCCATAGGAAACTCATTTTTAAATGGTTTCGACAAGAGAACATGGCTAG
TTGGATAAAATATGGATTTGGGGGGGGGGCAGGTGTCATTCACATCTCTATCTGATTTTT
CACTTTTCCGATCATTGTTTCTACATTTCTGTAGATTATGTCCCTTATGTCAATGCTGTT
GATTCAAGGTGGAGTTCATATGGTAACGAGGCTACATCATCAGCACACTATATTGAACGA
TTCATTGTTACTGATTTATCTGGTCATAGGAAGCATTCCAGTACTGGAGATCTTTTAAGC
ATTGAACTTCAGCAGGCCAAGAGTAACTCTTTGCTTCTTCAGAGGGAGGCCAATGCTCTG
GCCATGCAACAGAAGTGGAATTCCCTGGATGAAGGCCGTCACCTTACCTTAAATCTTCTA

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               13-287, gnl|bosTau2|chr11 (75322673-75322403)
               

               
               13-287, gnl|Hg17|chr9 (122696969-122696364)
               


               
               362-468, gnl|bosTau2|chr11 (75321954-75321848)
               

               
               362-468, gnl|Hg17|chr9 (122695921-122695815)
               

               
               362-468, gnl|Mm7|chr2 (37384581-37384475)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-287, gnl|bosTau2|chr11 (75322673-75322403)
               

               
               13-287, gnl|Hg17|chr9 (122696969-122696364)
               


               
               362-468, gnl|bosTau2|chr11 (75321954-75321848)
               

               
               362-468, gnl|Hg17|chr9 (122695921-122695815)
               

               
               362-468, gnl|Mm7|chr2 (37384581-37384475)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.133672)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               ebs (0.118301)

	13-287, gnl\|bosTau2\|chr11 (75322673-75322403)
	13-287, gnl\|Hg17\|chr9 (122696969-122696364)

	362-468, gnl\|bosTau2\|chr11 (75321954-75321848)
	362-468, gnl\|Hg17\|chr9 (122695921-122695815)
	362-468, gnl\|Mm7\|chr2 (37384581-37384475)