Non-Coding RNA Search

Ss1.1-rebs11c_n3.5

Sequence:


               
               TATCCCCAAGAACTAAAAGGAGTGGGTTCTGAATTCAATTCAGATTTCAAATGACCGAAA
TTTATCCCGAACAATGCAAAATCCAGGTTTTATTTTTGCCCTTCAGTTGTCTAATGTGAA
GGTTGGATGAATATAGCATGCACAGCTACAGGCTTTCTACTTAGCTTCTGGGTTTGCTAT
TAAAAATGCTGTTTACCCTCATTCCCTTCTCCTCAGCCCTTCATATTTCTTGGCCTCTCT
TCTTCTATACTGCAGATTTTTTCCCACCTATGGTACAAAGAAATTGCGATGTATATTTTC
ATGTAATTGGATTTGGGAATTCTGTCACCTTATGTAGTGAGTTCTTCCAAAATATAATTT
TTTTCCAATAATTGTCAAGTTGTTGGCTTTTATTGTATTGAATGAAGGTTATAATACTGA
GTGCCAGAGAAGTGCAGTTTAGAGAAAAATCTCAGGTTGATTCCTTATGCAAACAAACTT
AATACTTGAAAATCACTTGGCCATGGCAGTATATGTATTGGACTCTATATAGATTCTTAT
ATGAATCTCAAAGCAATATAGGGATATAAATGCTCTGTTTGCTATTGACATATTCTGTCA
CTGACATAGTGCACTTGGATTTTATTAATGTTTGAGCATAAGTATATTTCATAAATTTTC
TAAAACAGCATCAGGAAATGGTAAAATGAGCATGTACGGTGTTGAAGGCGGGCCCAGGTC
TCTCTGTGTTTGGTGTAGGGTTGGGACTAGGAAGTAGTCTTTGGTATATAAGGGACAGAA
CTTGAGACAGTACCAGATGGAACATGGCATTTGTGAGAATCAGGGATGCATCTCTGCTTT
GTGGGATTTGAAAAAATGCTTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATCCCCAAGAACTAAAAGGAGTGGGTTCTGAATTCAATTCAGATTTCAAATGACCGAAA
TTTATCCCGAACAATGCAAAATCCAGGTTTTATTTTTGCCCTTCAGTTGTCTAATGTGAA
GGTTGGATGAATATAGCATGCACAGCTACAGGCTTTCTACTTAGCTTCTGGGTTTGCTAT
TAAAAATGCTGTTTACCCTCATTCCCTTCTCCTCAGCCCTTCATATTTCTTGGCCTCTCT
TCTTCTATACTGCAGATTTTTTCCCACCTATGGTACAAAGAAATTGCGATGTATATTTTC
ATGTAATTGGATTTGGGAATTCTGTCACCTTATGTAGTGAGTTCTTCCAAAATATAATTT
TTTTCCAATAATTGTCAAGTTGTTGGCTTTTATTGTATTGAATGAAGGTTATAATACTGA
GTGCCAGAGAAGTGCAGTTTAGAGAAAAATCTCAGGTTGATTCCTTATGCAAACAAACTT
AATACTTGAAAATCACTTGGCCATGGCAGTATATGTATTGGACTCTATATAGATTCTTAT
ATGAATCTCAAAGCAATATAGGGATATAAATGCTCTGTTTGCTATTGACATATTCTGTCA
CTGACATAGTGCACTTGGATTTTATTAATGTTTGAGCATAAGTATATTTCATAAATTTTC
TAAAACAGCATCAGGAAATGGTAAAATGAGCATGTACGGTGTTGAAGGCGGGCCCAGGTC
TCTCTGTGTTTGGTGTAGGGTTGGGACTAGGAAGTAGTCTTTGGTATATAAGGGACAGAA
CTTGAGACAGTACCAGATGGAACATGGCATTTGTGAGAATCAGGGATGCATCTCTGCTTT
GTGGGATTTGAAAAAATGCTTTGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               279-397, + strand, RNAz p=0.665945

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               279-397, + strand, RNAz p=0.665945

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_003342, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_003342, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               120-863, gnl|bosTau2|chr11 (32949437-32948688)
               

               
               120-863, gnl|Hg17|chr17 (4121725-4120967)
               

               
               120-863, gnl|Mm7|chr11 (72765954-72766674)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               120-863, gnl|bosTau2|chr11 (32949437-32948688)
               

               
               120-863, gnl|Hg17|chr17 (4121725-4120967)
               

               
               120-863, gnl|Mm7|chr11 (72765954-72766674)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	120-863, gnl\|bosTau2\|chr11 (32949437-32948688)
	120-863, gnl\|Hg17\|chr17 (4121725-4120967)
	120-863, gnl\|Mm7\|chr11 (72765954-72766674)