Non-Coding RNA Search

Ss1.1-rebs12c_j22.5

Sequence:


               
               GAGGATACATACTCTGGGTTTCCATTTCACCCACACTGCCACAGCAGCACATAAAAGCGG
TCAGTCTAATCATGCCAGGAAGCAGCACAGACACAGCATAGCAGGAGTCCTCCCTATTCA
AAGAACTCAGTCTGATAATCTGCCTCCACCAGCCAATGGCAACCAACACCAAAGCCAGCT
AGCCCTCAGGAAGGTGATGTCCGATGGACCAGTCAAGCCAGAAGGAGGTGAGCAGAAAGG
CACTATTGAAAGCACACAGCAAGAACATTCCCCCCAATTTAAAGTCCTCATCCTTTAATT
TTCAGATTGTCTGATAAAGTATGTTTATCCACTTTTTAATGTGCTTTTGTGAGCATGGCA
TTTCAGGATTTCATCATCACCATGTAAGTCCCAAGATCGGTCTCATAATCTATCGACTAC
AGTGATTTGTATTTTTCTATGCACTGGGCATCTTTTGACTTTTGTTGGGAAATAGATTAA
CAGTATTCATATTGCAGAATGGAATGCATGCTACTAACCTAATCTGTTCAAGCATGACTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGATACATACTCTGGGTTTCCATTTCACCCACACTGCCACAGCAGCACATAAAAGCGG
TCAGTCTAATCATGCCAGGAAGCAGCACAGACACAGCATAGCAGGAGTCCTCCCTATTCA
AAGAACTCAGTCTGATAATCTGCCTCCACCAGCCAATGGCAACCAACACCAAAGCCAGCT
AGCCCTCAGGAAGGTGATGTCCGATGGACCAGTCAAGCCAGAAGGAGGTGAGCAGAAAGG
CACTATTGAAAGCACACAGCAAGAACATTCCCCCCAATTTAAAGTCCTCATCCTTTAATT
TTCAGATTGTCTGATAAAGTATGTTTATCCACTTTTTAATGTGCTTTTGTGAGCATGGCA
TTTCAGGATTTCATCATCACCATGTAAGTCCCAAGATCGGTCTCATAATCTATCGACTAC
AGTGATTTGTATTTTTCTATGCACTGGGCATCTTTTGACTTTTGTTGGGAAATAGATTAA
CAGTATTCATATTGCAGAATGGAATGCATGCTACTAACCTAATCTGTTCAAGCATGACTA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-540, gnl|bosTau2|chr4 (16561570-16562110)
               

               
               1-540, gnl|Hg17|chr7 (82095305-82094767)
               

               
               1-540, gnl|Mm7|chr5 (14276001-14276539)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-540, gnl|bosTau2|chr4 (16561570-16562110)
               

               
               1-540, gnl|Hg17|chr7 (82095305-82094767)
               

               
               1-540, gnl|Mm7|chr5 (14276001-14276539)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fco (0.314416)
               

               
               cbr (0.127975)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               cbr (0.127975)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)

	1-540, gnl\|bosTau2\|chr4 (16561570-16562110)
	1-540, gnl\|Hg17\|chr7 (82095305-82094767)
	1-540, gnl\|Mm7\|chr5 (14276001-14276539)