Non-Coding RNA Search

Ss1.1-rebs12c_k19.5

Sequence:


               
               GCCTTCCGGTGATCCACTTCCGTTCCTTGCTGCCTTGGACTGAGGGCCTCCGGAGTCGGT
GAAGGATCTGAAGATGGCTGGGCGGAAACTTGCTCTAAAAGCCATTGACTGGGTAGCCTT
TGGGGAGATCATACCCCGAAACCAGAAGGCCATTGCTAACTCCCTGAAATCCTGGAATGA
GACCCTCTCCACCAGGTTGGCTGCTCTACCTGAGAAGCCACCTGCTATTGACTGGGCTTA
CTACAAGGCCACCGTGGCAAAGGCTGGCTTGGTAGATGACTTTGAGAAGAAGTTTAATGC
CCTGAAGGTCCCTGTGCCAGAGGATAAATACACTGCTCTGGTGGATGCTGAAGAGCAAGA
AGATGTGAAAAGATGTGCTGAGTTTTTGTCTCTCTCAAAGGCCAGGATTGAGGCATATGA
GAAAGAGCTGGAGAAGATGAAGAACATAATTCCATTTGATCAGATGACAATCGAGGACTT
GAATGAAGTCTTCCCAGAAACCAAACTAGACAAGAAGAAGTATCCCTACTGGCCTCACAG
GCCAATTGAGAGTTTATAAACTTGCATCTTGGAGAAAGCTCTGGCCCTCGAATTACAAAC
TCCGGACATTAAAAATAATTACATAGTGAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTTCCGGTGATCCACTTCCGTTCCTTGCTGCCTTGGACTGAGGGCCTCCGGAGTCGGT
GAAGGATCTGAAGATGGCTGGGCGGAAACTTGCTCTAAAAGCCATTGACTGGGTAGCCTT
TGGGGAGATCATACCCCGAAACCAGAAGGCCATTGCTAACTCCCTGAAATCCTGGAATGA
GACCCTCTCCACCAGGTTGGCTGCTCTACCTGAGAAGCCACCTGCTATTGACTGGGCTTA
CTACAAGGCCACCGTGGCAAAGGCTGGCTTGGTAGATGACTTTGAGAAGAAGTTTAATGC
CCTGAAGGTCCCTGTGCCAGAGGATAAATACACTGCTCTGGTGGATGCTGAAGAGCAAGA
AGATGTGAAAAGATGTGCTGAGTTTTTGTCTCTCTCAAAGGCCAGGATTGAGGCATATGA
GAAAGAGCTGGAGAAGATGAAGAACATAATTCCATTTGATCAGATGACAATCGAGGACTT
GAATGAAGTCTTCCCAGAAACCAAACTAGACAAGAAGAAGTATCCCTACTGGCCTCACAG
GCCAATTGAGAGTTTATAAACTTGCATCTTGGAGAAAGCTCTGGCCCTCGAATTACAAAC
TCCGGACATTAAAAATAATTACATAGTGAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57108097|ref|XP_535426.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57108097|ref|XP_535426.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               121-229, - strand, RNAz p=0.920001

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-229, - strand, RNAz p=0.920001

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               79-647, gnl|bosTau2|chr15 (42436461-42435889)
               

               
               79-647, gnl|Hg17|chr9 (14058936-14059465)
               

               
               79-647, gnl|Mm7|chr15 (4946004-4945467)
               


               
               121-520, gnl|bosTau2|chr13 (47281126-47280741)
               

               
               121-520, gnl|Hg17|chr12 (67323004-67322600)
               

               
               121-520, gnl|Mm7|chr15 (4945962-4945563)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               79-647, gnl|bosTau2|chr15 (42436461-42435889)
               

               
               79-647, gnl|Hg17|chr9 (14058936-14059465)
               

               
               79-647, gnl|Mm7|chr15 (4946004-4945467)
               


               
               121-520, gnl|bosTau2|chr13 (47281126-47280741)
               

               
               121-520, gnl|Hg17|chr12 (67323004-67322600)
               

               
               121-520, gnl|Mm7|chr15 (4945962-4945563)

Expressed library(ies): 69 entry(ies)

More info

Expressed library(ies): 69 entry(ies)

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               hea (2.65849)
               

               
               ssp (1.89728)
               

               
               sme (1.22175)
               

               
               hlv (1.11405)
               

               
               mas (1.05152)
               

               
               sin (1.04969)
               

               
               nco (0.970403)
               

               
               che (0.954198)
               

               
               fat (0.884564)
               

               
               nms (0.855432)
               

               
               fhi (0.847889)
               

               
               amn (0.835422)
               

               
               nje (0.8296)
               

               
               col (0.780031)
               

               
               ton (0.702001)
               

               
               cst (0.700182)
               

               
               rec (0.692281)
               

               
               mgp (0.692042)
               

               
               duo (0.691204)
               

               
               cje (0.660939)
               

               
               eje (0.593003)
               

               
               pgl (0.592417)
               

               
               nlu (0.575043)
               

               
               cov (0.528611)
               

               
               fty (0.527519)
               

               
               ill (0.526778)
               

               
               fbs (0.526039)
               

               
               cki (0.495704)
               

               
               cbe (0.478469)
               

               
               ebs (0.473205)
               

               
               med (0.465008)
               

               
               bfe (0.449573)
               

               
               tes (0.415628)
               

               
               nca (0.410621)
               

               
               ute (0.398353)
               

               
               elu (0.385356)
               

               
               ese (0.379507)
               

               
               bla (0.373042)
               

               
               nep (0.36785)
               

               
               eru (0.360144)
               

               
               sto (0.359648)
               

               
               cut (0.339847)
               

               
               vin (0.332557)
               

               
               cag (0.302389)
               

               
               isp (0.300752)
               

               
               jej (0.296765)
               

               
               ste (0.270416)
               

               
               pla (0.267344)
               

               
               sug (0.254582)
               

               
               cly (0.241284)
               

               
               pan (0.23596)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

Expressed library(ies): 69 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (2.65849)
               

               
               ssp (1.89728)
               

               
               sme (1.22175)
               

               
               hlv (1.11405)
               

               
               mas (1.05152)
               

               
               sin (1.04969)
               

               
               nco (0.970403)
               

               
               che (0.954198)
               

               
               fat (0.884564)
               

               
               nms (0.855432)
               

               
               fhi (0.847889)
               

               
               amn (0.835422)
               

               
               nje (0.8296)
               

               
               col (0.780031)
               

               
               ton (0.702001)
               

               
               cst (0.700182)
               

               
               rec (0.692281)
               

               
               mgp (0.692042)
               

               
               duo (0.691204)
               

               
               cje (0.660939)
               

               
               eje (0.593003)
               

               
               pgl (0.592417)
               

               
               nlu (0.575043)
               

               
               cov (0.528611)
               

               
               fty (0.527519)
               

               
               ill (0.526778)
               

               
               fbs (0.526039)
               

               
               cki (0.495704)
               

               
               cbe (0.478469)
               

               
               ebs (0.473205)
               

               
               med (0.465008)
               

               
               bfe (0.449573)
               

               
               tes (0.415628)
               

               
               nca (0.410621)
               

               
               ute (0.398353)
               

               
               elu (0.385356)
               

               
               ese (0.379507)
               

               
               bla (0.373042)
               

               
               nep (0.36785)
               

               
               eru (0.360144)
               

               
               sto (0.359648)
               

               
               cut (0.339847)
               

               
               vin (0.332557)
               

               
               cag (0.302389)
               

               
               isp (0.300752)
               

               
               jej (0.296765)
               

               
               ste (0.270416)
               

               
               pla (0.267344)
               

               
               sug (0.254582)
               

               
               cly (0.241284)
               

               
               pan (0.23596)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

	79-647, gnl\|bosTau2\|chr15 (42436461-42435889)
	79-647, gnl\|Hg17\|chr9 (14058936-14059465)
	79-647, gnl\|Mm7\|chr15 (4946004-4945467)

	121-520, gnl\|bosTau2\|chr13 (47281126-47280741)
	121-520, gnl\|Hg17\|chr12 (67323004-67322600)
	121-520, gnl\|Mm7\|chr15 (4945962-4945563)

	hea (2.65849)
	ssp (1.89728)
	sme (1.22175)
	hlv (1.11405)
	mas (1.05152)
	sin (1.04969)
	nco (0.970403)
	che (0.954198)
	fat (0.884564)
	nms (0.855432)
	fhi (0.847889)
	amn (0.835422)
	nje (0.8296)
	col (0.780031)
	ton (0.702001)
	cst (0.700182)
	rec (0.692281)
	mgp (0.692042)
	duo (0.691204)
	cje (0.660939)
	eje (0.593003)
	pgl (0.592417)
	nlu (0.575043)
	cov (0.528611)
	fty (0.527519)
	ill (0.526778)
	fbs (0.526039)
	cki (0.495704)
	cbe (0.478469)
	ebs (0.473205)
	med (0.465008)
	bfe (0.449573)
	tes (0.415628)
	nca (0.410621)
	ute (0.398353)
	elu (0.385356)
	ese (0.379507)
	bla (0.373042)
	nep (0.36785)
	eru (0.360144)
	sto (0.359648)
	cut (0.339847)
	vin (0.332557)
	cag (0.302389)
	isp (0.300752)
	jej (0.296765)
	ste (0.270416)
	pla (0.267344)
	sug (0.254582)
	cly (0.241284)
	pan (0.23596)
	ece (0.229305)
	fcc (0.197785)
	sag (0.182715)
	cli (0.152812)
	eli (0.151814)
	ski (0.146735)
	pty (0.142714)
	lnt (0.142308)
	csk (0.140746)
	lyg (0.133103)
	kid (0.129735)
	ova (0.129132)
	thg (0.126791)
	eep (0.122564)
	ecc (0.115035)
	jca (0.11396)
	spc (0.113366)
	nbm (0.0993246)