Non-Coding RNA Search

Ss1.1-rebs12c_m17.5

Sequence:


               
               GTCGTCGGCATTGTGGCTGCTGCCGCCCTCTGCATCTTGATCCTCCTGTACGCCATGTAC
AAGTACAGGAACAGGGACGAGGGGTCCTATCAAGTGGATGAGACGCGGAACTACATCAGC
AACTCGGCCCAGAGCAACGGCACGCTCATCAAGGAGAAGCAGCAGAGCTCGAAGAGCGGC
CACAAGAAACAGAAAAACAAGGACAAAGAGTATTATGTGTAAAAGTGACACCACTAACAA
TTCGTGAATTTAAATCACAGAATTATTTATATATAAATATATAAATACTCGGAAAATGAG
ATTTAACAGATGTCAGAACTGTGCTATGAGATGGGGTATACCATGACTGTGGTGGGGAAA
ATCATTTTTAAAAGAACACACACAAAGGTGTACCTACCTATAAAGTCCAGCCATGGTTGC
TTTGATTCAGTCATCGCTCGGAGACAGAAAGATCTTTTCTGCCCTGCTGTATCATAAAGC
ACACACTTTTGCGCTCTGGAGCAAGCAGATGGCTCCTCCACTTTTGCGGACATGGAAGCT
TCCTTCTCTTGAGGACCTTTCACCCGAGGTAGAAGACTTCATGGCTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCGTCGGCATTGTGGCTGCTGCCGCCCTCTGCATCTTGATCCTCCTGTACGCCATGTAC
AAGTACAGGAACAGGGACGAGGGGTCCTATCAAGTGGATGAGACGCGGAACTACATCAGC
AACTCGGCCCAGAGCAACGGCACGCTCATCAAGGAGAAGCAGCAGAGCTCGAAGAGCGGC
CACAAGAAACAGAAAAACAAGGACAAAGAGTATTATGTGTAAAAGTGACACCACTAACAA
TTCGTGAATTTAAATCACAGAATTATTTATATATAAATATATAAATACTCGGAAAATGAG
ATTTAACAGATGTCAGAACTGTGCTATGAGATGGGGTATACCATGACTGTGGTGGGGAAA
ATCATTTTTAAAAGAACACACACAAAGGTGTACCTACCTATAAAGTCCAGCCATGGTTGC
TTTGATTCAGTCATCGCTCGGAGACAGAAAGATCTTTTCTGCCCTGCTGTATCATAAAGC
ACACACTTTTGCGCTCTGGAGCAAGCAGATGGCTCCTCCACTTTTGCGGACATGGAAGCT
TCCTTCTCTTGAGGACCTTTCACCCGAGGTAGAAGACTTCATGGCTTA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q8SPZ0_MACMU

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q8SPZ0_MACMU

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               401-516, - strand, RNAz p=0.970558

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               401-516, - strand, RNAz p=0.970558

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-516, gnl|bosTau2|chr10 (63798701-63799227)
               

               
               1-516, gnl|Hg17|chr14 (79397839-79398361)
               

               
               1-516, gnl|Mm7|chr12 (87812422-87812932)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-516, gnl|bosTau2|chr10 (63798701-63799227)
               

               
               1-516, gnl|Hg17|chr14 (79397839-79398361)
               

               
               1-516, gnl|Mm7|chr12 (87812422-87812932)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ebs (0.236602)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)

	1-516, gnl\|bosTau2\|chr10 (63798701-63799227)
	1-516, gnl\|Hg17\|chr14 (79397839-79398361)
	1-516, gnl\|Mm7\|chr12 (87812422-87812932)