Non-Coding RNA Search

Ss1.1-rebs12c_m3.5

Sequence:


               
               AGCAGACCCTGCTCTGCCGCACAACTCGGTCTGGGCCCGGGACCTGCAGCACTTCTCTCC
CCCAGCGCGGGCATGTGACCTGCAGGGAGTGCCTTGCTGGCCCGAGGCTGGCCCCGTGGC
TTCCTCTCTGCCGAGCCGTCCACCCCGCAGGCCCCGGGAGGCACCCTGCCCCTCTCGGTA
CTAAACAAGGGCCTTCCCACCTGGAAGTCTGATGTCATGTCTGGCTGCTTCCAGGGCGCG
GCGGCCTCACTGTGCAGGGTTCAGCCCTCTTCCCTCCAGGCTGTACGAGGAACCTGGCAG
GGTGGGCAGGGGCTGCCGCTGCAGTGCTGCACCCCCGCCCCCCAGGGAAGGCTGCTCCCC
CCCAGGTCAGCCTCTCTCGCTGGGTGGGCGGTGGGTCTGCAAGGAAAACTAGACACTACG
ATGAGTTCCTCACCTGTCTTCTCATTCTTAGGTCGTAGGCAGCTGTCTCCTACCCCGAGG
CTGCTGTAGCTTCTTTATTTATTCAGGGTGTTTTCGTATCGGAAAGCCAAAGCCAAAGCC
GTGGCTAATCTGCTCTGGCTCTGGGTTTGCTTTGAGATTGGTTTATTTCTCAACAGTCAA
GAAAGGAGAGGACTTGATGGCTCTTTCTTTTGAACCCTCCAGGACAGGTACTCGCCCTTC
CCTAGAGAGAAATATTATAACGTCAAGGACAGGCTTCCAGCGAAGAAGCCCGGCTTCTGC
CCGCAGCCGCCCTGAGCAGCCTGCCTGGGGCTGAGCAGACGGGGAGCTTGCTGCTCTGCC
CTCGGCCTGGGTGACAGGGCCGGGCCTGCGGAGGGAGTGTCAGACGCAGTTCACAAAGTG
TCGTTGCTAACGGTGTGGCACTGGGACTGGGTTGTAATAAAATGTTATTTAATCTTTGTC
TCTGTATTTTGATACTTGAATGACTCCCCTTTTATTTTGCTGTACATAGAACTGTTCATC
TGTCTTTGTCTGAATTACAAACCTCTTGTGGTACCAAACATGACCGACCTGTGCAACAAG
ATAGACTGACCTCACTACACGAGAGTGTAAATATTCCTGGGCTTTCAGCTTTGGTTTTGT
TATTTTCGTAACTGTACAACTTAGAACATACTGAATTAATAAATGAGAAGCGACATGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAGACCCTGCTCTGCCGCACAACTCGGTCTGGGCCCGGGACCTGCAGCACTTCTCTCC
CCCAGCGCGGGCATGTGACCTGCAGGGAGTGCCTTGCTGGCCCGAGGCTGGCCCCGTGGC
TTCCTCTCTGCCGAGCCGTCCACCCCGCAGGCCCCGGGAGGCACCCTGCCCCTCTCGGTA
CTAAACAAGGGCCTTCCCACCTGGAAGTCTGATGTCATGTCTGGCTGCTTCCAGGGCGCG
GCGGCCTCACTGTGCAGGGTTCAGCCCTCTTCCCTCCAGGCTGTACGAGGAACCTGGCAG
GGTGGGCAGGGGCTGCCGCTGCAGTGCTGCACCCCCGCCCCCCAGGGAAGGCTGCTCCCC
CCCAGGTCAGCCTCTCTCGCTGGGTGGGCGGTGGGTCTGCAAGGAAAACTAGACACTACG
ATGAGTTCCTCACCTGTCTTCTCATTCTTAGGTCGTAGGCAGCTGTCTCCTACCCCGAGG
CTGCTGTAGCTTCTTTATTTATTCAGGGTGTTTTCGTATCGGAAAGCCAAAGCCAAAGCC
GTGGCTAATCTGCTCTGGCTCTGGGTTTGCTTTGAGATTGGTTTATTTCTCAACAGTCAA
GAAAGGAGAGGACTTGATGGCTCTTTCTTTTGAACCCTCCAGGACAGGTACTCGCCCTTC
CCTAGAGAGAAATATTATAACGTCAAGGACAGGCTTCCAGCGAAGAAGCCCGGCTTCTGC
CCGCAGCCGCCCTGAGCAGCCTGCCTGGGGCTGAGCAGACGGGGAGCTTGCTGCTCTGCC
CTCGGCCTGGGTGACAGGGCCGGGCCTGCGGAGGGAGTGTCAGACGCAGTTCACAAAGTG
TCGTTGCTAACGGTGTGGCACTGGGACTGGGTTGTAATAAAATGTTATTTAATCTTTGTC
TCTGTATTTTGATACTTGAATGACTCCCCTTTTATTTTGCTGTACATAGAACTGTTCATC
TGTCTTTGTCTGAATTACAAACCTCTTGTGGTACCAAACATGACCGACCTGTGCAACAAG
ATAGACTGACCTCACTACACGAGAGTGTAAATATTCCTGGGCTTTCAGCTTTGGTTTTGT
TATTTTCGTAACTGTACAACTTAGAACATACTGAATTAATAAATGAGAAGCGACATGAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               604-720, + strand, RNAz p=0.722861

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               604-720, + strand, RNAz p=0.722861

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_015245, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_015245, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               165-720, gnl|bosTau2|chr23 (9203627-9204163)
               

               
               165-720, gnl|Hg17|chr6 (35165913-35166486)
               


               
               764-1140, gnl|bosTau2|chr23 (9204361-9204743)
               

               
               764-1140, gnl|Hg17|chr6 (35166748-35167158)
               

               
               764-1140, gnl|Mm7|chr17 (26248022-26248401)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               165-720, gnl|bosTau2|chr23 (9203627-9204163)
               

               
               165-720, gnl|Hg17|chr6 (35165913-35166486)
               


               
               764-1140, gnl|bosTau2|chr23 (9204361-9204743)
               

               
               764-1140, gnl|Hg17|chr6 (35166748-35167158)
               

               
               764-1140, gnl|Mm7|chr17 (26248022-26248401)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               thg (0.253582)
               

               
               ebs (0.236602)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               jca (0.11396)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.253582)
               

               
               ebs (0.236602)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               jca (0.11396)

	165-720, gnl\|bosTau2\|chr23 (9203627-9204163)
	165-720, gnl\|Hg17\|chr6 (35165913-35166486)

	764-1140, gnl\|bosTau2\|chr23 (9204361-9204743)
	764-1140, gnl\|Hg17\|chr6 (35166748-35167158)
	764-1140, gnl\|Mm7\|chr17 (26248022-26248401)

	thg (0.253582)
	ebs (0.236602)
	col (0.195008)
	nep (0.183925)
	eye (0.170503)
	fhi (0.169578)
	csp (0.161186)
	spl (0.143184)
	csk (0.140746)
	cst (0.140036)
	hlv (0.139256)
	che (0.136314)
	nmm (0.132802)
	ese (0.126502)
	bla (0.124347)
	jca (0.11396)