Ss1.1-rebs13c_e9.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCGACTGCTACATCGTGCTCAAGACCTTCCTGGACGACAGCGGGTCTCTGAGCTGGGC CATCTACTACTGGATCGGCGGGGAGGCCACGCTCGACAAGAAGGCCTGCTCTGCCATCCA CGCCGTCAACCTGCGCAACTACCTGGGCGCCGAGTGCCGCACTGTGCGGGAGGAGATGGG GGACGAGAGCGAGGAGTTCCTGCAGGTGTTTGACAGCGACATCTCCTATGTCGAGGGCGG AACAGCCAGCGGCTTCTACACCGTGGAGGACACGCACTACGTCACCAGGATGTACCGCGT TTATGGGAAAAAGAACATCAAGTTGGAGCCTGTGCCTCTCAAGGGGGCCTCCCTGGACCC AAGGTTTGTTTTCCTCCTGGACCGAGGGCTGGACATCGACGTGTGGCGGGGGGCCCAGGC CACGCTGAGTAGCACTACCAAGGCCAGGCTCTTTGCAGAGAAAATCAACAAGAACGAGAG GAAAGGGAAGGCAGAGATCTCGCTGCTGGTCCAAGGCCAGGAACCCCCAGAGTTTTGGGA GGTGCTGGGTGGGGAACCGGCCGAGATCAAGAAGCACGTGCCTGACGACTTCTGGCCCCC CCAGCCCAAGCTGTATAAGGTGGGCCTGGGCCTGGGCTACTTGGAGCTGCCACAGATCAA CTACAAGCTCTCTGTGGAACATAAGACGCGGCCCAAGGTGGAGCTGATGCCCAGGATGCG GCTGCTGCAGAGCCTGCTGGACACGCGCTGCGTGTACATCCTGGACTGTTGGTCCGACGT GTTCATCTGGCTTGGCCGCAAGTCCCCACGCCTGGTGCGCGCCGCTGCCCTCAAGCTGGG CCAGGAGCTGTGCGGGATGCTGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCGACTGCTACATCGTGCTCAAGACCTTCCTGGACGACAGCGGGTCTCTGAGCTGGGC CATCTACTACTGGATCGGCGGGGAGGCCACGCTCGACAAGAAGGCCTGCTCTGCCATCCA CGCCGTCAACCTGCGCAACTACCTGGGCGCCGAGTGCCGCACTGTGCGGGAGGAGATGGG GGACGAGAGCGAGGAGTTCCTGCAGGTGTTTGACAGCGACATCTCCTATGTCGAGGGCGG AACAGCCAGCGGCTTCTACACCGTGGAGGACACGCACTACGTCACCAGGATGTACCGCGT TTATGGGAAAAAGAACATCAAGTTGGAGCCTGTGCCTCTCAAGGGGGCCTCCCTGGACCC AAGGTTTGTTTTCCTCCTGGACCGAGGGCTGGACATCGACGTGTGGCGGGGGGCCCAGGC CACGCTGAGTAGCACTACCAAGGCCAGGCTCTTTGCAGAGAAAATCAACAAGAACGAGAG GAAAGGGAAGGCAGAGATCTCGCTGCTGGTCCAAGGCCAGGAACCCCCAGAGTTTTGGGA GGTGCTGGGTGGGGAACCGGCCGAGATCAAGAAGCACGTGCCTGACGACTTCTGGCCCCC CCAGCCCAAGCTGTATAAGGTGGGCCTGGGCCTGGGCTACTTGGAGCTGCCACAGATCAA CTACAAGCTCTCTGTGGAACATAAGACGCGGCCCAAGGTGGAGCTGATGCCCAGGATGCG GCTGCTGCAGAGCCTGCTGGACACGCGCTGCGTGTACATCCTGGACTGTTGGTCCGACGT GTTCATCTGGCTTGGCCGCAAGTCCCCACGCCTGGTGCGCGCCGCTGCCCTCAAGCTGGG CCAGGAGCTGTGCGGGATGCTGCA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 445-625, + strand, RNAz p=0.916582 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 445-625, + strand, RNAz p=0.916582 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 8-208, gnl|bosTau2|chr19 (26619672-26619472) | |
| 8-208, gnl|Hg17|chr17 (18095074-18094874) | |
| 8-208, gnl|Mm7|chr11 (60801450-60801248) | |
| 445-625, gnl|bosTau2|chr19 (26618217-26618037) | |
| 445-625, gnl|Hg17|chr17 (18092763-18092583) | |
| 445-625, gnl|Mm7|chr11 (60799852-60799673) | |
| 721-864, gnl|bosTau2|chr19 (26617446-26617303) | |
| 721-864, gnl|canFam2|chr5 (44311466-44311292) | |
| 721-864, gnl|danRer3|chr3 (37658809-37658607) | |
| 721-864, gnl|echTel1|scaffold_257212 (1640-1839) | |
| 721-864, gnl|fr1|chrUn (188322405-188322604) | |
| 721-864, gnl|galGal2|chr14 (7124518-7124717) | |
| 721-864, gnl|hg17|chr17 (18091688-18091893) | |
| 721-864, gnl|Hg17|chr17 (18091891-18091748) | |
| 721-864, gnl|loxAfr1|scaffold_17608 (9167-9350) | |
| 721-864, gnl|mm7|chr11 (60798687-60798892) | |
| 721-864, gnl|Mm7|chr11 (60798890-60798747) | |
| 721-864, gnl|monDom2|scaffold_55 (12143615-12143415) | |
| 721-864, gnl|oryCun1|scaffold_214627 (687-892) | |
| 721-864, gnl|panTro1|chr19 (18499062-18499267) | |
| 721-864, gnl|rheMac2|chr16 (18172347-18172552) | |
| 721-864, gnl|rn3|chr10 (46876694-46876899) | |
| 721-864, gnl|tetNig1|chrUn_random (39290877-39290676) | |
| 721-864, gnl|xenTro1|scaffold_142 (1116077-1115880) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 8-208, gnl|bosTau2|chr19 (26619672-26619472) | |
| 8-208, gnl|Hg17|chr17 (18095074-18094874) | |
| 8-208, gnl|Mm7|chr11 (60801450-60801248) | |
| 445-625, gnl|bosTau2|chr19 (26618217-26618037) | |
| 445-625, gnl|Hg17|chr17 (18092763-18092583) | |
| 445-625, gnl|Mm7|chr11 (60799852-60799673) | |
| 721-864, gnl|bosTau2|chr19 (26617446-26617303) | |
| 721-864, gnl|canFam2|chr5 (44311466-44311292) | |
| 721-864, gnl|danRer3|chr3 (37658809-37658607) | |
| 721-864, gnl|echTel1|scaffold_257212 (1640-1839) | |
| 721-864, gnl|fr1|chrUn (188322405-188322604) | |
| 721-864, gnl|galGal2|chr14 (7124518-7124717) | |
| 721-864, gnl|hg17|chr17 (18091688-18091893) | |
| 721-864, gnl|Hg17|chr17 (18091891-18091748) | |
| 721-864, gnl|loxAfr1|scaffold_17608 (9167-9350) | |
| 721-864, gnl|mm7|chr11 (60798687-60798892) | |
| 721-864, gnl|Mm7|chr11 (60798890-60798747) | |
| 721-864, gnl|monDom2|scaffold_55 (12143615-12143415) | |
| 721-864, gnl|oryCun1|scaffold_214627 (687-892) | |
| 721-864, gnl|panTro1|chr19 (18499062-18499267) | |
| 721-864, gnl|rheMac2|chr16 (18172347-18172552) | |
| 721-864, gnl|rn3|chr10 (46876694-46876899) | |
| 721-864, gnl|tetNig1|chrUn_random (39290877-39290676) | |
| 721-864, gnl|xenTro1|scaffold_142 (1116077-1115880) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| clu (0.239292) | |
| ece (0.229305) | |
| eep (0.122564) | |
| ebs (0.118301) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.239292) | |
| ece (0.229305) | |
| eep (0.122564) | |
| ebs (0.118301) |