Non-Coding RNA Search

Ss1.1-rebs13c_f2.5

Sequence:


               
               TATAAATTCCCAGTGCTCTTATTTTTGCACCTGAATGATGTTTTTCTGTTCATCATAGTT
TGAATGAATTCATTCCTTTTTCTCCTTGCTTACTGGCACACAGGCCCCATCGCAGGTGTA
TGGAGGAGTGACCTACTATAACCCCGCCCAGCAGCAGGTGCAGCCAAAGCCCTCCCCACC
CCGGAGGACTCCCCAGCCGGTCACCATTAAGCCCCCACCACCCGAGGTTGTAAGCAGGGG
TTCCAGTTAATGTGAATGTCTGAATATTTTAAATCTAACATCATATAAAAGACAACAGAG
GTGAGAACCCAGGAGAGAAGAAGAATACAACTGGCTGTTTGCTACCGGGAAGGCTTCAAG
GATATAGGGTGGCTCCTACCAGCCAGCAGCTGAGTGAGGAGGACCCCACCTTCCTCTGAG
GAGAGGCTCTGTTGGAGAAAGGGAGAAACAAGTGGACTTCCTCCCGTTTCCGGTCTTTCC
TTGAGTTGGCTATGCTCAGAGGAGCCGGGATCCAGACAGCCCCAGCTTCTGAGACTACAT
CTAGGAGTCCACGTTTTTTTTGCTCATCTTCACTTTCTGCTGGGAAATTCACGTGTCTTC
TGCTCCCAGGGAAGCTCCTTCCTGTTTATTTTGTTTTCTAAGGTGTTCATTTTTAAAGCC
TGGCTTCTTGTTCTGAAATTAATGTTCTTTTAGTTTCCCTCTCTCTCTCTCTCTCTTTTT
CTCTGTCTCTGCCTTTAAATGAAACAAATTCATTCTCTGGTTTGCTTGCTCCTCTGGTTT
CCCTTTTGGCTCTTCCTTGCATCCCAGATAATTGAGAACTTATTTCCTGGCCAGTCTTCC
CCCACCAAGTGTTCAAAGAGCTGGCCTTTCATTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATAAATTCCCAGTGCTCTTATTTTTGCACCTGAATGATGTTTTTCTGTTCATCATAGTT
TGAATGAATTCATTCCTTTTTCTCCTTGCTTACTGGCACACAGGCCCCATCGCAGGTGTA
TGGAGGAGTGACCTACTATAACCCCGCCCAGCAGCAGGTGCAGCCAAAGCCCTCCCCACC
CCGGAGGACTCCCCAGCCGGTCACCATTAAGCCCCCACCACCCGAGGTTGTAAGCAGGGG
TTCCAGTTAATGTGAATGTCTGAATATTTTAAATCTAACATCATATAAAAGACAACAGAG
GTGAGAACCCAGGAGAGAAGAAGAATACAACTGGCTGTTTGCTACCGGGAAGGCTTCAAG
GATATAGGGTGGCTCCTACCAGCCAGCAGCTGAGTGAGGAGGACCCCACCTTCCTCTGAG
GAGAGGCTCTGTTGGAGAAAGGGAGAAACAAGTGGACTTCCTCCCGTTTCCGGTCTTTCC
TTGAGTTGGCTATGCTCAGAGGAGCCGGGATCCAGACAGCCCCAGCTTCTGAGACTACAT
CTAGGAGTCCACGTTTTTTTTGCTCATCTTCACTTTCTGCTGGGAAATTCACGTGTCTTC
TGCTCCCAGGGAAGCTCCTTCCTGTTTATTTTGTTTTCTAAGGTGTTCATTTTTAAAGCC
TGGCTTCTTGTTCTGAAATTAATGTTCTTTTAGTTTCCCTCTCTCTCTCTCTCTCTTTTT
CTCTGTCTCTGCCTTTAAATGAAACAAATTCATTCTCTGGTTTGCTTGCTCCTCTGGTTT
CCCTTTTGGCTCTTCCTTGCATCCCAGATAATTGAGAACTTATTTCCTGGCCAGTCTTCC
CCCACCAAGTGTTCAAAGAGCTGGCCTTTCATTTGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               110-228, - strand, RNAz p=0.915654
               

               
               336-474, - strand, RNAz p=0.831163

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               110-228, - strand, RNAz p=0.915654
               

               
               336-474, - strand, RNAz p=0.831163

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               4-228, gnl|bosTau2|chr19 (34448485-34448257)
               

               
               4-228, gnl|Hg17|chr17 (35579005-35579227)
               

               
               4-228, gnl|Mm7|chr11 (98940232-98940451)
               


               
               291-874, gnl|bosTau2|chr19 (34447358-34446778)
               

               
               291-874, gnl|canFam2|chr9 (25733025-25731520)
               

               
               291-874, gnl|dasNov1|scaffold_31768 (2110-593)
               

               
               291-874, gnl|echTel1|scaffold_310535 (46525-47802)
               

               
               291-874, gnl|hg17|chr17 (35580094-35581621)
               

               
               291-874, gnl|Hg17|chr17 (35580226-35580793)
               

               
               291-874, gnl|loxAfr1|scaffold_4088 (83396-81888)
               

               
               291-874, gnl|mm7|chr11 (98941112-98942555)
               

               
               291-874, gnl|Mm7|chr11 (98941300-98941809)
               

               
               291-874, gnl|monDom2|scaffold_18 (49371603-49373117)
               

               
               291-874, gnl|oryCun1|scaffold_207753 (4224-2716)
               

               
               291-874, gnl|panTro1|chr19 (38819782-38821309)
               

               
               291-874, gnl|rheMac2|chr16 (50281766-50283301)
               

               
               291-874, gnl|rn3|chr10 (87616596-87618033)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-228, gnl|bosTau2|chr19 (34448485-34448257)
               

               
               4-228, gnl|Hg17|chr17 (35579005-35579227)
               

               
               4-228, gnl|Mm7|chr11 (98940232-98940451)
               


               
               291-874, gnl|bosTau2|chr19 (34447358-34446778)
               

               
               291-874, gnl|canFam2|chr9 (25733025-25731520)
               

               
               291-874, gnl|dasNov1|scaffold_31768 (2110-593)
               

               
               291-874, gnl|echTel1|scaffold_310535 (46525-47802)
               

               
               291-874, gnl|hg17|chr17 (35580094-35581621)
               

               
               291-874, gnl|Hg17|chr17 (35580226-35580793)
               

               
               291-874, gnl|loxAfr1|scaffold_4088 (83396-81888)
               

               
               291-874, gnl|mm7|chr11 (98941112-98942555)
               

               
               291-874, gnl|Mm7|chr11 (98941300-98941809)
               

               
               291-874, gnl|monDom2|scaffold_18 (49371603-49373117)
               

               
               291-874, gnl|oryCun1|scaffold_207753 (4224-2716)
               

               
               291-874, gnl|panTro1|chr19 (38819782-38821309)
               

               
               291-874, gnl|rheMac2|chr16 (50281766-50283301)
               

               
               291-874, gnl|rn3|chr10 (87616596-87618033)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	110-228, - strand, RNAz p=0.915654
	336-474, - strand, RNAz p=0.831163

	4-228, gnl\|bosTau2\|chr19 (34448485-34448257)
	4-228, gnl\|Hg17\|chr17 (35579005-35579227)
	4-228, gnl\|Mm7\|chr11 (98940232-98940451)

	291-874, gnl\|bosTau2\|chr19 (34447358-34446778)
	291-874, gnl\|canFam2\|chr9 (25733025-25731520)
	291-874, gnl\|dasNov1\|scaffold_31768 (2110-593)
	291-874, gnl\|echTel1\|scaffold_310535 (46525-47802)
	291-874, gnl\|hg17\|chr17 (35580094-35581621)
	291-874, gnl\|Hg17\|chr17 (35580226-35580793)
	291-874, gnl\|loxAfr1\|scaffold_4088 (83396-81888)
	291-874, gnl\|mm7\|chr11 (98941112-98942555)
	291-874, gnl\|Mm7\|chr11 (98941300-98941809)
	291-874, gnl\|monDom2\|scaffold_18 (49371603-49373117)
	291-874, gnl\|oryCun1\|scaffold_207753 (4224-2716)
	291-874, gnl\|panTro1\|chr19 (38819782-38821309)
	291-874, gnl\|rheMac2\|chr16 (50281766-50283301)
	291-874, gnl\|rn3\|chr10 (87616596-87618033)