Ss1.1-rebs13c_m11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTATAAAAGCCCAAAGCTGGAAGCAGCCTTCACAGAGACCCACCAGTTCTTGGTAGGAT GGCTTCTTACCGTCTGCTCCTCCTTTGCCTCGCTGGACTGGTGTTTGTGTCTGAGGCTGG CCCTGCGGGTGCTGGTGAATCCAAGTGTCCTCTGATGGTCAAAGTCCTGGATGCTGTCCG AGGCAGTCCGGCCGTGAACGTAGGCGTGAAAGTGTTCAAAAAGGCTGCTGATGGGACTTG GGAGCCCTTTGCCTTGGGGAAAACCAGTGAATTTGGAGAGCTCCATGGGCTCACAACAGA TGAGAAATTTGTAGAAGGCATATACAAAGTGGAATTGGACACCAAATCCTACTGGAAGGC ACTTGGCATTTCCCCATTCCATGAATATGCAGAGGTTGTGTTCACAGCCAACGACTCCGG CCGACGCCACTACACCATCGCTGCCCTGCTTAGCCCCTACTCTTACTCCACCACAGCCCT CGTCAGCAGCCCCAAGGAGGGAGCTCTTTGAAGGACAAGGGACAGGCTTGCATGTAACCA GTAGTATTCCATTTTTATAAGCAGTGTTTTCACTTTATAAACTATGTTAGAAACTCGGGC AGAGACAATAAAACATTCCTATTAAAGCGCTTCTCATTTAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTATAAAAGCCCAAAGCTGGAAGCAGCCTTCACAGAGACCCACCAGTTCTTGGTAGGAT GGCTTCTTACCGTCTGCTCCTCCTTTGCCTCGCTGGACTGGTGTTTGTGTCTGAGGCTGG CCCTGCGGGTGCTGGTGAATCCAAGTGTCCTCTGATGGTCAAAGTCCTGGATGCTGTCCG AGGCAGTCCGGCCGTGAACGTAGGCGTGAAAGTGTTCAAAAAGGCTGCTGATGGGACTTG GGAGCCCTTTGCCTTGGGGAAAACCAGTGAATTTGGAGAGCTCCATGGGCTCACAACAGA TGAGAAATTTGTAGAAGGCATATACAAAGTGGAATTGGACACCAAATCCTACTGGAAGGC ACTTGGCATTTCCCCATTCCATGAATATGCAGAGGTTGTGTTCACAGCCAACGACTCCGG CCGACGCCACTACACCATCGCTGCCCTGCTTAGCCCCTACTCTTACTCCACCACAGCCCT CGTCAGCAGCCCCAAGGAGGGAGCTCTTTGAAGGACAAGGGACAGGCTTGCATGTAACCA GTAGTATTCCATTTTTATAAGCAGTGTTTTCACTTTATAAACTATGTTAGAAACTCGGGC AGAGACAATAAAACATTCCTATTAAAGCGCTTCTCATTTAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 127-259, gnl|bosTau2|chr6 (4150316-4150184) | |
| 127-259, gnl|canFam2|chr7 (60925820-60925669) | |
| 127-259, gnl|dasNov1|scaffold_3532 (55848-55697) | |
| 127-259, gnl|echTel1|scaffold_318814 (319303-319450) | |
| 127-259, gnl|galGal2|chr2 (105327438-105327574) | |
| 127-259, gnl|hg17|chr18 (27426794-27426945) | |
| 127-259, gnl|Hg17|chr18 (27426856-27426988) | |
| 127-259, gnl|mm7|chr18 (21037111-21037262) | |
| 127-259, gnl|Mm7|chr18 (21037173-21037305) | |
| 127-259, gnl|monDom2|scaffold_4 (124639095-124638971) | |
| 127-259, gnl|oryCun1|scaffold_152078 (4392-4539) | |
| 127-259, gnl|panTro1|chr17 (23325165-23325316) | |
| 127-259, gnl|rheMac2|chr18 (24512903-24513054) | |
| 127-259, gnl|rn3|chr18 (12434278-12434429) | |
| 393-639, gnl|bosTau2|chr6 (4143080-4142818) | |
| 393-639, gnl|canFam2|chr7 (60920569-60920240) | |
| 393-639, gnl|dasNov1|scaffold_3532 (50817-50508) | |
| 393-639, gnl|echTel1|scaffold_318814 (326416-326733) | |
| 393-639, gnl|galGal2|chr2 (105333757-105334094) | |
| 393-639, gnl|hg17|chr18 (27432511-27432842) | |
| 393-639, gnl|Hg17|chr18 (27432527-27432792) | |
| 393-639, gnl|loxAfr1|scaffold_16842 (34545-34222) | |
| 393-639, gnl|mm7|chr18 (21044331-21044648) | |
| 393-639, gnl|Mm7|chr18 (21044347-21044595) | |
| 393-639, gnl|monDom2|scaffold_4 (124634783-124634432) | |
| 393-639, gnl|oryCun1|scaffold_152078 (10071-10389) | |
| 393-639, gnl|panTro1|chr17 (23330893-23331224) | |
| 393-639, gnl|rheMac2|chr18 (24518981-24519309) | |
| 393-639, gnl|rn3|chr18 (12440058-12440375) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 127-259, gnl|bosTau2|chr6 (4150316-4150184) | |
| 127-259, gnl|canFam2|chr7 (60925820-60925669) | |
| 127-259, gnl|dasNov1|scaffold_3532 (55848-55697) | |
| 127-259, gnl|echTel1|scaffold_318814 (319303-319450) | |
| 127-259, gnl|galGal2|chr2 (105327438-105327574) | |
| 127-259, gnl|hg17|chr18 (27426794-27426945) | |
| 127-259, gnl|Hg17|chr18 (27426856-27426988) | |
| 127-259, gnl|mm7|chr18 (21037111-21037262) | |
| 127-259, gnl|Mm7|chr18 (21037173-21037305) | |
| 127-259, gnl|monDom2|scaffold_4 (124639095-124638971) | |
| 127-259, gnl|oryCun1|scaffold_152078 (4392-4539) | |
| 127-259, gnl|panTro1|chr17 (23325165-23325316) | |
| 127-259, gnl|rheMac2|chr18 (24512903-24513054) | |
| 127-259, gnl|rn3|chr18 (12434278-12434429) | |
| 393-639, gnl|bosTau2|chr6 (4143080-4142818) | |
| 393-639, gnl|canFam2|chr7 (60920569-60920240) | |
| 393-639, gnl|dasNov1|scaffold_3532 (50817-50508) | |
| 393-639, gnl|echTel1|scaffold_318814 (326416-326733) | |
| 393-639, gnl|galGal2|chr2 (105333757-105334094) | |
| 393-639, gnl|hg17|chr18 (27432511-27432842) | |
| 393-639, gnl|Hg17|chr18 (27432527-27432792) | |
| 393-639, gnl|loxAfr1|scaffold_16842 (34545-34222) | |
| 393-639, gnl|mm7|chr18 (21044331-21044648) | |
| 393-639, gnl|Mm7|chr18 (21044347-21044595) | |
| 393-639, gnl|monDom2|scaffold_4 (124634783-124634432) | |
| 393-639, gnl|oryCun1|scaffold_152078 (10071-10389) | |
| 393-639, gnl|panTro1|chr17 (23330893-23331224) | |
| 393-639, gnl|rheMac2|chr18 (24518981-24519309) | |
| 393-639, gnl|rn3|chr18 (12440058-12440375) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| fbs (20.5155) | |
| cli (10.6968) | |
| ebs (5.91506) | |
| fli (5.88355) | |
| fce (4.34546) | |
| cbe (4.06699) | |
| eli (3.64354) | |
| lun (1.50489) | |
| cki (1.48711) | |
| elu (0.385356) | |
| sme (0.305437) | |
| ece (0.229305) | |
| ski (0.146735) | |
| cst (0.140036) | |
| kid (0.129735) | |
| ret (0.128733) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fbs (20.5155) | |
| cli (10.6968) | |
| ebs (5.91506) | |
| fli (5.88355) | |
| fce (4.34546) | |
| cbe (4.06699) | |
| eli (3.64354) | |
| lun (1.50489) | |
| cki (1.48711) | |
| elu (0.385356) | |
| sme (0.305437) | |
| ece (0.229305) | |
| ski (0.146735) | |
| cst (0.140036) | |
| kid (0.129735) | |
| ret (0.128733) |