Non-Coding RNA Search

Ss1.1-rebs14c_f6.5

Sequence:


               
               AAACGAGTCAATGAGCTCTTCTCTCAGCTGTTGGTTTAGCAGCTGACAGTACCATTGACT
TCACCGTGATGTAAAATAAGAGAAAAAACCTTTACTCTTGGATGGAGACCTTGAAGTTTA
AAAATACATAATTCCCTGATTGGGAGTGGAATTCATTTGACAAATATTTATGGAGCACCC
AAGAAGCCCTGTGGCTGTAGTGCTGAACAAAACAAAGGTCCCCCAAATCCCTGTCTTTAT
AGAGCTTACATTCTTTTGAGCATGTTTAACCTTTGAAACTACAGTGTTTCTACAGCCCCA
CTGCGTTATGACAGTATAATTTTGTGATAAAATAATTCATGAAGATGTATTGATTTTTTT
CAAATAATGCCTTCTGCATCCCTTGGTTGATATGGTGTCCTATTCCAGTCAACAAATTAC
AGCTCTAGTTCTATATATATATTTTTTATTCATGTGTAAGTCCTCCTGTTTTTCAAGTTA
TATCGGTGAGGTAGCACTTTGTTCTGATTTTGCTATGTTCTGTTGATAGCATTGTTCTCA
TGGGGTTATATCTGTTCCGTTTTACTTTTTATTTAATTAAAGATCAACACTTAAAACCAC
AAAAAAAAAAAAAAAAACTCGAGTTTTTTTTTTTTTTTTTTAACAAGTTTGAAGTCGTCA
GTTACGGGTTATACACACATTCTTAAGGAAATTTGAAATGATCTTTAAGAATGAGTAGCT
TTGAGGAGTTCCCCCTGTGGCACAGTGGGTTAAGGACTCAGTGTTACCACAGAGCCACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACGAGTCAATGAGCTCTTCTCTCAGCTGTTGGTTTAGCAGCTGACAGTACCATTGACT
TCACCGTGATGTAAAATAAGAGAAAAAACCTTTACTCTTGGATGGAGACCTTGAAGTTTA
AAAATACATAATTCCCTGATTGGGAGTGGAATTCATTTGACAAATATTTATGGAGCACCC
AAGAAGCCCTGTGGCTGTAGTGCTGAACAAAACAAAGGTCCCCCAAATCCCTGTCTTTAT
AGAGCTTACATTCTTTTGAGCATGTTTAACCTTTGAAACTACAGTGTTTCTACAGCCCCA
CTGCGTTATGACAGTATAATTTTGTGATAAAATAATTCATGAAGATGTATTGATTTTTTT
CAAATAATGCCTTCTGCATCCCTTGGTTGATATGGTGTCCTATTCCAGTCAACAAATTAC
AGCTCTAGTTCTATATATATATTTTTTATTCATGTGTAAGTCCTCCTGTTTTTCAAGTTA
TATCGGTGAGGTAGCACTTTGTTCTGATTTTGCTATGTTCTGTTGATAGCATTGTTCTCA
TGGGGTTATATCTGTTCCGTTTTACTTTTTATTTAATTAAAGATCAACACTTAAAACCAC
AAAAAAAAAAAAAAAAACTCGAGTTTTTTTTTTTTTTTTTTAACAAGTTTGAAGTCGTCA
GTTACGGGTTATACACACATTCTTAAGGAAATTTGAAATGATCTTTAAGAATGAGTAGCT
TTGAGGAGTTCCCCCTGTGGCACAGTGGGTTAAGGACTCAGTGTTACCACAGAGCCACAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-118, + strand, RNAz p=0.893353

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, + strand, RNAz p=0.893353

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               5-61, + strand, RNAmicro p=0.986852

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               5-61, + strand, RNAmicro p=0.986852

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-354, gnl|bosTau2|chr2 (20325732-20325353)
               

               
               1-354, gnl|Hg17|chr2 (170189944-170190625)
               

               
               1-354, gnl|Mm7|chr2 (69599160-69599519)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-354, gnl|bosTau2|chr2 (20325732-20325353)
               

               
               1-354, gnl|Hg17|chr2 (170189944-170190625)
               

               
               1-354, gnl|Mm7|chr2 (69599160-69599519)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	1-354, gnl\|bosTau2\|chr2 (20325732-20325353)
	1-354, gnl\|Hg17\|chr2 (170189944-170190625)
	1-354, gnl\|Mm7\|chr2 (69599160-69599519)