Non-Coding RNA Search

Ss1.1-rebs14c_g14.5

Sequence:


               
               CTTCCAGCGGTTTCAGGCGCGACTCTAGGAAGGGGGCCTTGGCCTGGCTTGACTTGGTCA
AGCGGTTTCAGGTTCCGGTCCGACGCCGGCGTCTTTGCTGAGGGTCACATTGAGCTTCCA
GCGGTTTCAGGCGCGACTCTAGGAGTCAGCACTATGGCAGAAGACATCCAGACCAAAATC
AAGAACTACCAGACAGCTCCTTTTGACAGCCGCTTCCCCAACCAGAACCAGACCAGGAAC
TGCTGGCAGAACTACCTGGACTTCCACCGCTGTGAGAAAGCAATGACTGCTAAAGGGGGT
GACGTCTCCGTGTGCGAATGGTACCGGCGTGTGTACAAGTCTCTCTGCCCCATATCCTGG
GTGTCAGCCTGGGATGACCGCCGGGCGGAAGGCACGTTTCCTGGGAAGATCTGAACTGGC
CCCCCCACCTCATCTGTCCTCCGTCCTTCTCCACAGGGTGGTGCAGGGGGACCTGGATTC
ATGGTGATTCCCACCCTGAGATCCTGAATCATGGTTTAACTAATAATAAATACTCACTGG
AAAAGTGTAAAGCTGTGTACGTGTAAAATAGCTGGATGATGGGGTGGAGGTTGAGGTGGG
ACTGAATTCAGGGTGCTTTTTTCTTTTCTTTAAATTTTTATTTTAATAAACATTGATCAC
CCAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCCAGCGGTTTCAGGCGCGACTCTAGGAAGGGGGCCTTGGCCTGGCTTGACTTGGTCA
AGCGGTTTCAGGTTCCGGTCCGACGCCGGCGTCTTTGCTGAGGGTCACATTGAGCTTCCA
GCGGTTTCAGGCGCGACTCTAGGAGTCAGCACTATGGCAGAAGACATCCAGACCAAAATC
AAGAACTACCAGACAGCTCCTTTTGACAGCCGCTTCCCCAACCAGAACCAGACCAGGAAC
TGCTGGCAGAACTACCTGGACTTCCACCGCTGTGAGAAAGCAATGACTGCTAAAGGGGGT
GACGTCTCCGTGTGCGAATGGTACCGGCGTGTGTACAAGTCTCTCTGCCCCATATCCTGG
GTGTCAGCCTGGGATGACCGCCGGGCGGAAGGCACGTTTCCTGGGAAGATCTGAACTGGC
CCCCCCACCTCATCTGTCCTCCGTCCTTCTCCACAGGGTGGTGCAGGGGGACCTGGATTC
ATGGTGATTCCCACCCTGAGATCCTGAATCATGGTTTAACTAATAATAAATACTCACTGG
AAAAGTGTAAAGCTGTGTACGTGTAAAATAGCTGGATGATGGGGTGGAGGTTGAGGTGGG
ACTGAATTCAGGGTGCTTTTTTCTTTTCTTTAAATTTTTATTTTAATAAACATTGATCAC
CCAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|227130|prf||1614425A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|227130|prf||1614425A

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               219-551, gnl|bosTau2|chr10 (34431034-34430708)
               

               
               219-551, gnl|Hg17|chr17 (44146123-44146458)
               

               
               219-551, gnl|Mm7|chr3 (71569640-71569088)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               219-551, gnl|bosTau2|chr10 (34431034-34430708)
               

               
               219-551, gnl|Hg17|chr17 (44146123-44146458)
               

               
               219-551, gnl|Mm7|chr3 (71569640-71569088)

Expressed library(ies): 52 entry(ies)

More info

Expressed library(ies): 52 entry(ies)

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               hlv (1.67108)
               

               
               ton (1.2285)
               

               
               duo (1.20961)
               

               
               col (1.17005)
               

               
               che (1.09051)
               

               
               fce (1.08637)
               

               
               nms (1.06929)
               

               
               ill (1.05356)
               

               
               mas (1.05152)
               

               
               cst (0.980255)
               

               
               fbs (0.876732)
               

               
               fhi (0.847889)
               

               
               ssp (0.813118)
               

               
               nco (0.808669)
               

               
               fcc (0.791139)
               

               
               nlu (0.766724)
               

               
               pty (0.713572)
               

               
               cje (0.660939)
               

               
               ese (0.632511)
               

               
               jej (0.593531)
               

               
               ebs (0.591506)
               

               
               hyp (0.571347)
               

               
               cga (0.558191)
               

               
               nep (0.551775)
               

               
               fty (0.527519)
               

               
               cly (0.482567)
               

               
               ece (0.45861)
               

               
               lnt (0.426925)
               

               
               amn (0.417711)
               

               
               hea (0.408998)
               

               
               nbm (0.397298)
               

               
               cov (0.396458)
               

               
               ecc (0.345105)
               

               
               jca (0.34188)
               

               
               mcp (0.341297)
               

               
               nje (0.33184)
               

               
               cki (0.330469)
               

               
               csp (0.322373)
               

               
               eje (0.296501)
               

               
               nmm (0.265604)
               

               
               eep (0.245128)
               

               
               pgl (0.236967)
               

               
               med (0.232504)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               eli (0.151814)
               

               
               isp (0.150376)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               eru (0.120048)

Expressed library(ies): 52 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (1.67108)
               

               
               ton (1.2285)
               

               
               duo (1.20961)
               

               
               col (1.17005)
               

               
               che (1.09051)
               

               
               fce (1.08637)
               

               
               nms (1.06929)
               

               
               ill (1.05356)
               

               
               mas (1.05152)
               

               
               cst (0.980255)
               

               
               fbs (0.876732)
               

               
               fhi (0.847889)
               

               
               ssp (0.813118)
               

               
               nco (0.808669)
               

               
               fcc (0.791139)
               

               
               nlu (0.766724)
               

               
               pty (0.713572)
               

               
               cje (0.660939)
               

               
               ese (0.632511)
               

               
               jej (0.593531)
               

               
               ebs (0.591506)
               

               
               hyp (0.571347)
               

               
               cga (0.558191)
               

               
               nep (0.551775)
               

               
               fty (0.527519)
               

               
               cly (0.482567)
               

               
               ece (0.45861)
               

               
               lnt (0.426925)
               

               
               amn (0.417711)
               

               
               hea (0.408998)
               

               
               nbm (0.397298)
               

               
               cov (0.396458)
               

               
               ecc (0.345105)
               

               
               jca (0.34188)
               

               
               mcp (0.341297)
               

               
               nje (0.33184)
               

               
               cki (0.330469)
               

               
               csp (0.322373)
               

               
               eje (0.296501)
               

               
               nmm (0.265604)
               

               
               eep (0.245128)
               

               
               pgl (0.236967)
               

               
               med (0.232504)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               eli (0.151814)
               

               
               isp (0.150376)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               eru (0.120048)

	219-551, gnl\|bosTau2\|chr10 (34431034-34430708)
	219-551, gnl\|Hg17\|chr17 (44146123-44146458)
	219-551, gnl\|Mm7\|chr3 (71569640-71569088)

	hlv (1.67108)
	ton (1.2285)
	duo (1.20961)
	col (1.17005)
	che (1.09051)
	fce (1.08637)
	nms (1.06929)
	ill (1.05356)
	mas (1.05152)
	cst (0.980255)
	fbs (0.876732)
	fhi (0.847889)
	ssp (0.813118)
	nco (0.808669)
	fcc (0.791139)
	nlu (0.766724)
	pty (0.713572)
	cje (0.660939)
	ese (0.632511)
	jej (0.593531)
	ebs (0.591506)
	hyp (0.571347)
	cga (0.558191)
	nep (0.551775)
	fty (0.527519)
	cly (0.482567)
	ece (0.45861)
	lnt (0.426925)
	amn (0.417711)
	hea (0.408998)
	nbm (0.397298)
	cov (0.396458)
	ecc (0.345105)
	jca (0.34188)
	mcp (0.341297)
	nje (0.33184)
	cki (0.330469)
	csp (0.322373)
	eje (0.296501)
	nmm (0.265604)
	eep (0.245128)
	pgl (0.236967)
	med (0.232504)
	sin (0.174948)
	eye (0.170503)
	cut (0.169924)
	eli (0.151814)
	isp (0.150376)
	nca (0.136874)
	pla (0.133672)
	kid (0.129735)
	eru (0.120048)