Ss1.1-rebs14c_g18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAAGAAGAAAGCCTGGGAAAGCGATCGCGGGCGCAGTGAGAGCTGCACTTAGAATTATA ATAAAAATAAGGCGCTCGCGGGACGCATGCGCACGGCCAACGGAGGCGAGCCGGCCGCAG CTTCCCTTCGGATTCGCGGGGCGGACGGACGAACCCCGATGGGGTCGGAGCGGATGGAGA TGCGGAAGCGGCAGATGGCCGCATCCGCAAAGCCCTCATCCCCGGGCCCAGGCCAGCCCC GCGGGGGGAGCCGGGGCTCCAATGCCTGCTGCTTCTGCTGGTGCTGCTGCTGTAGCTGTT CGTGCTTCACCGTTAGAAGCCAAGAGGAACAGAGGCTCCGGCCGGCTTCCTATGAACTCA GAAGGGCGGATCTTCCCACCTGTGAAGAAAGCCCGAGTCCCACGCTGGAGGAGGCCAGCG CCTGGGCCCGGTCCTTCGAGCAGCTCATGCTCACGGCCGCCGGCAGGAATGCCTTCCGGG AGTTTCTCCGCACGGAGTTCAGCGAGGAAAACCTGCTCTTCTGGATGGCCTGTGAGGAAC TGAAAAAGGAGGCGAACAAAACCATTATTGAAGAGAAAGCCAGGATAATATACGAAGACT ACATTTCCATCCTTTCTCCCAAAGAGGTCAGCCTGGACTCGCGCGTGCGGGAGCTCATCG ACAGGAACATGGCCGAGCCGTCCCCGCACATCTTCGACGATGCCCAGCTCCAGATCTACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAAGAAGAAAGCCTGGGAAAGCGATCGCGGGCGCAGTGAGAGCTGCACTTAGAATTATA ATAAAAATAAGGCGCTCGCGGGACGCATGCGCACGGCCAACGGAGGCGAGCCGGCCGCAG CTTCCCTTCGGATTCGCGGGGCGGACGGACGAACCCCGATGGGGTCGGAGCGGATGGAGA TGCGGAAGCGGCAGATGGCCGCATCCGCAAAGCCCTCATCCCCGGGCCCAGGCCAGCCCC GCGGGGGGAGCCGGGGCTCCAATGCCTGCTGCTTCTGCTGGTGCTGCTGCTGTAGCTGTT CGTGCTTCACCGTTAGAAGCCAAGAGGAACAGAGGCTCCGGCCGGCTTCCTATGAACTCA GAAGGGCGGATCTTCCCACCTGTGAAGAAAGCCCGAGTCCCACGCTGGAGGAGGCCAGCG CCTGGGCCCGGTCCTTCGAGCAGCTCATGCTCACGGCCGCCGGCAGGAATGCCTTCCGGG AGTTTCTCCGCACGGAGTTCAGCGAGGAAAACCTGCTCTTCTGGATGGCCTGTGAGGAAC TGAAAAAGGAGGCGAACAAAACCATTATTGAAGAGAAAGCCAGGATAATATACGAAGACT ACATTTCCATCCTTTCTCCCAAAGAGGTCAGCCTGGACTCGCGCGTGCGGGAGCTCATCG ACAGGAACATGGCCGAGCCGTCCCCGCACATCTTCGACGATGCCCAGCTCCAGATCTACA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 1-155, gnl|bosTau2|chr14 (14599990-14599836) | |
| 1-155, gnl|canFam2|chr29 (8553145-8553523) | |
| 1-155, gnl|dasNov1|scaffold_37361 (2619-2998) | |
| 1-155, gnl|hg17|chr8 (54955954-54956336) | |
| 1-155, gnl|Hg17|chr8 (54956043-54956197) | |
| 1-155, gnl|loxAfr1|scaffold_45519 (3314-2942) | |
| 1-155, gnl|mm7|chr1 (5015150-5014782) | |
| 1-155, gnl|Mm7|chr1 (5015063-5014903) | |
| 1-155, gnl|oryCun1|scaffold_207511 (6377-6004) | |
| 1-155, gnl|panTro1|chr7 (56637881-56638263) | |
| 1-155, gnl|rheMac2|chr8 (56471907-56472289) | |
| 1-155, gnl|rn3|chr5 (14737950-14738286) | |
| 156-304, gnl|bosTau2|chr14 (14576596-14576448) | |
| 156-304, gnl|Hg17|chr8 (55014689-55014837) | |
| 156-304, gnl|Mm7|chr1 (4919581-4919439) | |
| 393-628, gnl|bosTau2|chr13 (35062143-35062378) | |
| 393-628, gnl|canFam2|chr24 (50562839-50563081) | |
| 393-628, gnl|danRer3|chr2 (23023257-23023015) | |
| 393-628, gnl|dasNov1|scaffold_126471 (5071-5313) | |
| 393-628, gnl|echTel1|scaffold_305572 (1417-1176) | |
| 393-628, gnl|fr1|chrUn (3126475-3126233) | |
| 393-628, gnl|galGal2|chr20 (9061812-9061564) | |
| 393-628, gnl|hg17|chr20 (62175937-62176179) | |
| 393-628, gnl|Hg17|chr20 (62176163-62175939) | |
| 393-628, gnl|loxAfr1|scaffold_34818 (34094-33859) | |
| 393-628, gnl|mm7|chr2 (182190284-182190526) | |
| 393-628, gnl|Mm7|chr2 (182190510-182190286) | |
| 393-628, gnl|monDom2|scaffold_1 (185096612-185096854) | |
| 393-628, gnl|oryCun1|scaffold_139113 (5823-6058) | |
| 393-628, gnl|panTro1|chr21_random (19994012-19994254) | |
| 393-628, gnl|rheMac2|chr10 (268742-268500) | |
| 393-628, gnl|rn3|chr3 (170746555-170746797) | |
| 393-628, gnl|tetNig1|chrUn_random (16847937-16848176) | |
| 393-628, gnl|xenTro1|scaffold_8 (1927928-1927690) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-155, gnl|bosTau2|chr14 (14599990-14599836) | |
| 1-155, gnl|canFam2|chr29 (8553145-8553523) | |
| 1-155, gnl|dasNov1|scaffold_37361 (2619-2998) | |
| 1-155, gnl|hg17|chr8 (54955954-54956336) | |
| 1-155, gnl|Hg17|chr8 (54956043-54956197) | |
| 1-155, gnl|loxAfr1|scaffold_45519 (3314-2942) | |
| 1-155, gnl|mm7|chr1 (5015150-5014782) | |
| 1-155, gnl|Mm7|chr1 (5015063-5014903) | |
| 1-155, gnl|oryCun1|scaffold_207511 (6377-6004) | |
| 1-155, gnl|panTro1|chr7 (56637881-56638263) | |
| 1-155, gnl|rheMac2|chr8 (56471907-56472289) | |
| 1-155, gnl|rn3|chr5 (14737950-14738286) | |
| 156-304, gnl|bosTau2|chr14 (14576596-14576448) | |
| 156-304, gnl|Hg17|chr8 (55014689-55014837) | |
| 156-304, gnl|Mm7|chr1 (4919581-4919439) | |
| 393-628, gnl|bosTau2|chr13 (35062143-35062378) | |
| 393-628, gnl|canFam2|chr24 (50562839-50563081) | |
| 393-628, gnl|danRer3|chr2 (23023257-23023015) | |
| 393-628, gnl|dasNov1|scaffold_126471 (5071-5313) | |
| 393-628, gnl|echTel1|scaffold_305572 (1417-1176) | |
| 393-628, gnl|fr1|chrUn (3126475-3126233) | |
| 393-628, gnl|galGal2|chr20 (9061812-9061564) | |
| 393-628, gnl|hg17|chr20 (62175937-62176179) | |
| 393-628, gnl|Hg17|chr20 (62176163-62175939) | |
| 393-628, gnl|loxAfr1|scaffold_34818 (34094-33859) | |
| 393-628, gnl|mm7|chr2 (182190284-182190526) | |
| 393-628, gnl|Mm7|chr2 (182190510-182190286) | |
| 393-628, gnl|monDom2|scaffold_1 (185096612-185096854) | |
| 393-628, gnl|oryCun1|scaffold_139113 (5823-6058) | |
| 393-628, gnl|panTro1|chr21_random (19994012-19994254) | |
| 393-628, gnl|rheMac2|chr10 (268742-268500) | |
| 393-628, gnl|rn3|chr3 (170746555-170746797) | |
| 393-628, gnl|tetNig1|chrUn_random (16847937-16848176) | |
| 393-628, gnl|xenTro1|scaffold_8 (1927928-1927690) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pgl (0.236967) | |
| ebs (0.118301) |