Ss1.1-rebs14c_l6.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTCTCTTCCTGTTTCCCATCATGGCGCAGGATCAAGGTGAAAAAGAAAACCCCATGCGG GAACTTCGCATCCGCAAGCTCTGCCTCAACATCTGCGTTGGGGAGAGTGGAGACAGACTG ACCCGGGCAGCCAAGGTGCTGGAGCAGCTCACAGGCCAGACTCCTGTGTTTTCCAAAGCT AGATACACCGTCAGATCCTTTGGCATCAGGAGAAATGAAAAGATTGCCGTCCACTGCACA GTCCGTGGGGCCAAGGCAGAAGAAATACTTGAGAAAGGTCTAAAGGTGCGAGAGTACGAG TTAAGAAAAAATAACTTCTCGGATACTGGAAACTTTGGTTTTGGGATCCAAGAACACATC GATCTGGGGATCAAATATGACCCAAGCATTGGTATCTACGGCCTGGACTTCTACGTGGTG CTGGGTAGGCCAGGTTTCAGCATCGCAGACAAGAAGCGCAGGACAGGCTGCATTGGGGCC AAACACAGAATCAGCAAAGAGGAGGCCATGCGCTGGTTCCAGCAGAAGTATGATGGGATC ATCCTTCCTGGCAAATAAATTCCCGTTTCTATTCAAAAGGCTAATAAAAAGTTTTCATTG AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTCTCTTCCTGTTTCCCATCATGGCGCAGGATCAAGGTGAAAAAGAAAACCCCATGCGG GAACTTCGCATCCGCAAGCTCTGCCTCAACATCTGCGTTGGGGAGAGTGGAGACAGACTG ACCCGGGCAGCCAAGGTGCTGGAGCAGCTCACAGGCCAGACTCCTGTGTTTTCCAAAGCT AGATACACCGTCAGATCCTTTGGCATCAGGAGAAATGAAAAGATTGCCGTCCACTGCACA GTCCGTGGGGCCAAGGCAGAAGAAATACTTGAGAAAGGTCTAAAGGTGCGAGAGTACGAG TTAAGAAAAAATAACTTCTCGGATACTGGAAACTTTGGTTTTGGGATCCAAGAACACATC GATCTGGGGATCAAATATGACCCAAGCATTGGTATCTACGGCCTGGACTTCTACGTGGTG CTGGGTAGGCCAGGTTTCAGCATCGCAGACAAGAAGCGCAGGACAGGCTGCATTGGGGCC AAACACAGAATCAGCAAAGAGGAGGCCATGCGCTGGTTCCAGCAGAAGTATGATGGGATC ATCCTTCCTGGCAAATAAATTCCCGTTTCTATTCAAAAGGCTAATAAAAAGTTTTCATTG AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 27-178, gnl|bosTau2|chr2 (82495913-82495762) | |
| 27-178, gnl|canFam2|chr2 (78677408-78677249) | |
| 27-178, gnl|danRer3|chrNA (56147532-56147377) | |
| 27-178, gnl|dasNov1|scaffold_533 (7903-8074) | |
| 27-178, gnl|echTel1|scaffold_314076 (111510-111656) | |
| 27-178, gnl|fr1|chrUn (294573986-294574145) | |
| 27-178, gnl|galGal2|chr23 (4964948-4965104) | |
| 27-178, gnl|hg17|chr1 (23764405-23764576) | |
| 27-178, gnl|Hg17|chr1 (23764404-23764555) | |
| 27-178, gnl|loxAfr1|scaffold_807 (175072-174913) | |
| 27-178, gnl|mm7|chr4 (135431156-135430997) | |
| 27-178, gnl|Mm7|chr4 (135431155-135431004) | |
| 27-178, gnl|monDom2|scaffold_91 (217784-217943) | |
| 27-178, gnl|oryCun1|scaffold_202692 (4340-4498) | |
| 27-178, gnl|panTro1|chr1 (24142764-24142935) | |
| 27-178, gnl|rheMac2|chr1 (26300975-26301143) | |
| 27-178, gnl|rn3|chr5 (154839882-154839723) | |
| 27-178, gnl|tetNig1|chr21 (512810-512641) | |
| 27-178, gnl|xenTro1|scaffold_46 (1412546-1412391) | |
| 252-623, gnl|bosTau2|chr11 (35992607-35992266) | |
| 252-623, gnl|Hg17|chr10 (89695465-89695829) | |
| 252-623, gnl|Mm7|chr9 (59173298-59172936) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 27-178, gnl|bosTau2|chr2 (82495913-82495762) | |
| 27-178, gnl|canFam2|chr2 (78677408-78677249) | |
| 27-178, gnl|danRer3|chrNA (56147532-56147377) | |
| 27-178, gnl|dasNov1|scaffold_533 (7903-8074) | |
| 27-178, gnl|echTel1|scaffold_314076 (111510-111656) | |
| 27-178, gnl|fr1|chrUn (294573986-294574145) | |
| 27-178, gnl|galGal2|chr23 (4964948-4965104) | |
| 27-178, gnl|hg17|chr1 (23764405-23764576) | |
| 27-178, gnl|Hg17|chr1 (23764404-23764555) | |
| 27-178, gnl|loxAfr1|scaffold_807 (175072-174913) | |
| 27-178, gnl|mm7|chr4 (135431156-135430997) | |
| 27-178, gnl|Mm7|chr4 (135431155-135431004) | |
| 27-178, gnl|monDom2|scaffold_91 (217784-217943) | |
| 27-178, gnl|oryCun1|scaffold_202692 (4340-4498) | |
| 27-178, gnl|panTro1|chr1 (24142764-24142935) | |
| 27-178, gnl|rheMac2|chr1 (26300975-26301143) | |
| 27-178, gnl|rn3|chr5 (154839882-154839723) | |
| 27-178, gnl|tetNig1|chr21 (512810-512641) | |
| 27-178, gnl|xenTro1|scaffold_46 (1412546-1412391) | |
| 252-623, gnl|bosTau2|chr11 (35992607-35992266) | |
| 252-623, gnl|Hg17|chr10 (89695465-89695829) | |
| 252-623, gnl|Mm7|chr9 (59173298-59172936) |
| Expressed library(ies): 92 entry(ies) | More info |
| Expressed library(ies): 92 entry(ies) | Help | Less info |
| cje (10.4098) | |
| che (8.86041) | |
| bla (8.08257) | |
| cki (6.93985) | |
| cut (6.79694) | |
| cst (5.60146) | |
| pgl (5.45024) | |
| eje (5.43586) | |
| nca (4.37996) | |
| ssp (3.52351) | |
| fat (3.39083) | |
| amn (3.34169) | |
| sug (3.30957) | |
| nco (3.23468) | |
| med (3.1388) | |
| duo (3.11042) | |
| pro (3.0722) | |
| hea (3.06748) | |
| ova (2.97004) | |
| eep (2.94154) | |
| lnt (2.84616) | |
| csk (2.81492) | |
| ill (2.80948) | |
| ski (2.78797) | |
| col (2.73011) | |
| sto (2.69736) | |
| thg (2.66261) | |
| nmm (2.52324) | |
| gul (2.48624) | |
| eru (2.40096) | |
| hlv (2.36736) | |
| fty (2.28592) | |
| pty (2.28343) | |
| ese (2.27704) | |
| sin (2.27432) | |
| fli (2.23169) | |
| mcp (2.21843) | |
| ecc (2.18567) | |
| ece (2.06375) | |
| jca (2.05128) | |
| aor (1.95274) | |
| nlu (1.91681) | |
| mgp (1.84544) | |
| spc (1.70049) | |
| jej (1.68167) | |
| nje (1.6592) | |
| nep (1.65532) | |
| fce (1.62955) | |
| elu (1.54143) | |
| sme (1.52718) | |
| nbm (1.48987) | |
| fcc (1.38449) | |
| lyg (1.33103) | |
| ebs (1.30131) | |
| nms (1.28315) | |
| mas (1.26183) | |
| ute (1.19506) | |
| fhi (1.18704) | |
| mga (1.12144) | |
| fbs (1.05208) | |
| rec (1.03842) | |
| eye (1.02302) | |
| csp (0.967118) | |
| cly (0.965135) | |
| tra (0.861645) | |
| ste (0.811249) | |
| kid (0.778412) | |
| cag (0.755972) | |
| cmu (0.745573) | |
| pan (0.707881) | |
| eli (0.607257) | |
| cte (0.58548) | |
| hyp (0.571347) | |
| mgm (0.541028) | |
| ton (0.526501) | |
| pla (0.401016) | |
| ret (0.3862) | |
| sag (0.36543) | |
| vin (0.332557) | |
| ldo (0.291008) | |
| cga (0.279096) | |
| cov (0.264306) | |
| cbe (0.239234) | |
| tes (0.207814) | |
| fco (0.157208) | |
| cli (0.152812) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| liv (0.146284) | |
| lin (0.145603) | |
| spl (0.143184) | |
| clu (0.119646) |
| Expressed library(ies): 92 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (10.4098) | |
| che (8.86041) | |
| bla (8.08257) | |
| cki (6.93985) | |
| cut (6.79694) | |
| cst (5.60146) | |
| pgl (5.45024) | |
| eje (5.43586) | |
| nca (4.37996) | |
| ssp (3.52351) | |
| fat (3.39083) | |
| amn (3.34169) | |
| sug (3.30957) | |
| nco (3.23468) | |
| med (3.1388) | |
| duo (3.11042) | |
| pro (3.0722) | |
| hea (3.06748) | |
| ova (2.97004) | |
| eep (2.94154) | |
| lnt (2.84616) | |
| csk (2.81492) | |
| ill (2.80948) | |
| ski (2.78797) | |
| col (2.73011) | |
| sto (2.69736) | |
| thg (2.66261) | |
| nmm (2.52324) | |
| gul (2.48624) | |
| eru (2.40096) | |
| hlv (2.36736) | |
| fty (2.28592) | |
| pty (2.28343) | |
| ese (2.27704) | |
| sin (2.27432) | |
| fli (2.23169) | |
| mcp (2.21843) | |
| ecc (2.18567) | |
| ece (2.06375) | |
| jca (2.05128) | |
| aor (1.95274) | |
| nlu (1.91681) | |
| mgp (1.84544) | |
| spc (1.70049) | |
| jej (1.68167) | |
| nje (1.6592) | |
| nep (1.65532) | |
| fce (1.62955) | |
| elu (1.54143) | |
| sme (1.52718) | |
| nbm (1.48987) | |
| fcc (1.38449) | |
| lyg (1.33103) | |
| ebs (1.30131) | |
| nms (1.28315) | |
| mas (1.26183) | |
| ute (1.19506) | |
| fhi (1.18704) | |
| mga (1.12144) | |
| fbs (1.05208) | |
| rec (1.03842) | |
| eye (1.02302) | |
| csp (0.967118) | |
| cly (0.965135) | |
| tra (0.861645) | |
| ste (0.811249) | |
| kid (0.778412) | |
| cag (0.755972) | |
| cmu (0.745573) | |
| pan (0.707881) | |
| eli (0.607257) | |
| cte (0.58548) | |
| hyp (0.571347) | |
| mgm (0.541028) | |
| ton (0.526501) | |
| pla (0.401016) | |
| ret (0.3862) | |
| sag (0.36543) | |
| vin (0.332557) | |
| ldo (0.291008) | |
| cga (0.279096) | |
| cov (0.264306) | |
| cbe (0.239234) | |
| tes (0.207814) | |
| fco (0.157208) | |
| cli (0.152812) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| liv (0.146284) | |
| lin (0.145603) | |
| spl (0.143184) | |
| clu (0.119646) |