Non-Coding RNA Search

Ss1.1-rebs14c_m10.5

Sequence:


               
               AGGAACCCGGGAAGCAGAGGCAGCAAAGGCACTCACGGAGGGCGGTAGCCATGGGGACAG
TCCGTAGGGATCTGAGCCTGGGAAACTGTGACGCTGACCCCTTGGTATGACGCCCATCAT
CTTTATGCCTGGCAGCCCTTGCTGGGTCATGGGCCTTGGGCAGATGCCAAAGAGCCGAGC
AGTGGTGGTGGCCAGCGGGCAGAGCATCCCTGCTTGGGCTAGGAAAGCTTTACCTTCTCT
GAGTGCCTCCGCCCGAGAGATGCATGGTCCGTGGCTCTGGGAGGCCACGCGGTGCCGTGG
TCCATTGAAGGCCTTCCGCTTCATTCACCCCCCCCCCCACTCCTTACAGAGACCCTGCCC
TTGCCCAGGAGCTTCTAGATGAAAATCAAAAGGAGGTTCAAGGAACCAAAGGAAAGGCCC
GCCCCGCCCCACCCACCCATCTCCTGCCCCTGTGCCGCGCCCGGGCAGCTCCATCACCAG
CCCCGCTGCTGGCTCCTGGTTGGAATGAAAAGGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAACCCGGGAAGCAGAGGCAGCAAAGGCACTCACGGAGGGCGGTAGCCATGGGGACAG
TCCGTAGGGATCTGAGCCTGGGAAACTGTGACGCTGACCCCTTGGTATGACGCCCATCAT
CTTTATGCCTGGCAGCCCTTGCTGGGTCATGGGCCTTGGGCAGATGCCAAAGAGCCGAGC
AGTGGTGGTGGCCAGCGGGCAGAGCATCCCTGCTTGGGCTAGGAAAGCTTTACCTTCTCT
GAGTGCCTCCGCCCGAGAGATGCATGGTCCGTGGCTCTGGGAGGCCACGCGGTGCCGTGG
TCCATTGAAGGCCTTCCGCTTCATTCACCCCCCCCCCCACTCCTTACAGAGACCCTGCCC
TTGCCCAGGAGCTTCTAGATGAAAATCAAAAGGAGGTTCAAGGAACCAAAGGAAAGGCCC
GCCCCGCCCCACCCACCCATCTCCTGCCCCTGTGCCGCGCCCGGGCAGCTCCATCACCAG
CCCCGCTGCTGGCTCCTGGTTGGAATGAAAAGGCTC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               83-516, gnl|bosTau2|chr11 (55323451-55323869)
               

               
               83-516, gnl|Hg17|chr2 (27083976-27084397)
               

               
               83-516, gnl|Mm7|chr5 (29831018-29831414)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               83-516, gnl|bosTau2|chr11 (55323451-55323869)
               

               
               83-516, gnl|Hg17|chr2 (27083976-27084397)
               

               
               83-516, gnl|Mm7|chr5 (29831018-29831414)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ece (0.45861)
               

               
               ecc (0.23007)
               

               
               fbs (0.175346)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.45861)
               

               
               ecc (0.23007)
               

               
               fbs (0.175346)
               

               
               ebs (0.118301)

	83-516, gnl\|bosTau2\|chr11 (55323451-55323869)
	83-516, gnl\|Hg17\|chr2 (27083976-27084397)
	83-516, gnl\|Mm7\|chr5 (29831018-29831414)