Non-Coding RNA Search

Ss1.1-rebs14c_o16.5

Sequence:


               
               GAGGCCCAGGGCAGACCCCAGCAGGAGGGGAGAAAGGCATGGCCGTGACACGACAGGACA
GGATGAGGGCTAATACTGACGGAGAACACGTGGTCTGCGGAGGCGGCCTCCTGGAGGCAG
CTCTTGGGGGATGTCGCCCCACACCAGCCCTGCCGACTCCAGGTCCATCTCTTACCCTGG
AATTTTCTGACACAAGCTGGACAGCGCGGGTTTAGGGATGCACTCTGGACGGAGGATGGC
AGGAAGGCCCATGTGTGAATCCGGACGAGACAGCAGTGGGAAGGGACTGTGTCTCTCCCA
GCCCAGGCAGCTTCTGAGGGTTTGCTCATTCTTTCTTGATACTTTTTCACTTCCACTGGC
CCCTGAAGCGGGTCATCATTGCCAGCACACTGCAGAGGAGATGGGGTTCTAGAAGCGCCT
GGACCTGCTTCCACGCTGGTCCTGCCCACTGTCGTGGCTCCGTCTCTTCTTATTCACGCA
ACACAGGGTGAGCAGTGTTTACTGCCTTCTTGATGTCTGCTGTTCCTTTTGTCCTGGGGG
CATGGGGGCTAGGGGAGAAGGAAGAGGGGCCAGGCTTTGCCCAGAAAACCCACCGGACCC
CCAGCCACCAGACCGCGGCCCCAGCCTTTAAGGAGTCCCTGAAAATCAGGCCCGGCCAGG
CCAGGAGGAGTGCCAGTTGGGGCTGAGGCCCGGGGACTCGCGACTGTTCACACGTACACG
TAGGTTTTCTCACCGGGAGCCTAGGAGCCCCGCAGCGCTGACCAGAAGTGAAGATGGTTA
TGTACAATTTATATGTTTCAAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGCCCAGGGCAGACCCCAGCAGGAGGGGAGAAAGGCATGGCCGTGACACGACAGGACA
GGATGAGGGCTAATACTGACGGAGAACACGTGGTCTGCGGAGGCGGCCTCCTGGAGGCAG
CTCTTGGGGGATGTCGCCCCACACCAGCCCTGCCGACTCCAGGTCCATCTCTTACCCTGG
AATTTTCTGACACAAGCTGGACAGCGCGGGTTTAGGGATGCACTCTGGACGGAGGATGGC
AGGAAGGCCCATGTGTGAATCCGGACGAGACAGCAGTGGGAAGGGACTGTGTCTCTCCCA
GCCCAGGCAGCTTCTGAGGGTTTGCTCATTCTTTCTTGATACTTTTTCACTTCCACTGGC
CCCTGAAGCGGGTCATCATTGCCAGCACACTGCAGAGGAGATGGGGTTCTAGAAGCGCCT
GGACCTGCTTCCACGCTGGTCCTGCCCACTGTCGTGGCTCCGTCTCTTCTTATTCACGCA
ACACAGGGTGAGCAGTGTTTACTGCCTTCTTGATGTCTGCTGTTCCTTTTGTCCTGGGGG
CATGGGGGCTAGGGGAGAAGGAAGAGGGGCCAGGCTTTGCCCAGAAAACCCACCGGACCC
CCAGCCACCAGACCGCGGCCCCAGCCTTTAAGGAGTCCCTGAAAATCAGGCCCGGCCAGG
CCAGGAGGAGTGCCAGTTGGGGCTGAGGCCCGGGGACTCGCGACTGTTCACACGTACACG
TAGGTTTTCTCACCGGGAGCCTAGGAGCCCCGCAGCGCTGACCAGAAGTGAAGATGGTTA
TGTACAATTTATATGTTTCAAAGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               122-213, - strand, RNAz p=0.891892

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               122-213, - strand, RNAz p=0.891892

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               138-295, - strand, RNAmicro p=0.999799

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               138-295, - strand, RNAmicro p=0.999799

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               122-772, gnl|bosTau2|chr18 (47075797-47076440)
               

               
               122-772, gnl|Hg17|chr19 (52260662-52261256)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               122-772, gnl|bosTau2|chr18 (47075797-47076440)
               

               
               122-772, gnl|Hg17|chr19 (52260662-52261256)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nje (0.16592)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               ebs (0.118301)

	122-772, gnl\|bosTau2\|chr18 (47075797-47076440)
	122-772, gnl\|Hg17\|chr19 (52260662-52261256)