Non-Coding RNA Search

Ss1.1-rebs15c_c14.5

Sequence:


               
               GCGCCGCGCGGGCCGACGGACGGCGACCATGGCGCCCTGGCGGCCCGGAAGCAAGACGGT
CCTCCTTCCTCTCCGCCGCGCCTTTTCAGGCCGTGGCTGTCAGCTCGCCCCCGAGCGCAG
CGCTGAGCGCAGGGATGCAGCGCCCAGCCGCGTCTCAAGTTTCTGCCCTCCAAGAAAATC
TTGCCATGATTGGATAGGACCCCCAGATAAATATTCAAACCTTCGACCTGTTCACTTTTA
CATCCCTGAAAATGAGTCACCACTGGAACAAAAGCTAAGAGAATTAAGACAAGAAACACA
GGAATGGAACCAACAGTTCTGGGCGAACCAAAATTTGACTTTTCATAAGGAAAAAGAAGA
ATTTATTCACTCAAGACTGAAAGCTAAAGGCCTGGGACTGACAGCGGAACCAGGTGCAAA
AGCAACATTGAATGCAGAAGAAATGGCTGAGTTTTACAAGGAATTTCTGAGTAAAAATTT
TCAGAAGCACATGTATTATAACAGGGACTGGTACAAGCGTAATTTTGCCATCACCTTCTT
CATGGCAAAAGTGGCCTTGGAGAGGATCTGGAGCAAGCTTCCACTGAAACAAAAGAAGAG
CAGCGCCTAGGAGCCCGCCGGGGCCCACACGCCCTGCGTCCGAGGGTCCGTGAGAGAAGC
AGCTGCTTGCAGGCGCTCGCCTTCCGAGGGCTCTGAACCCTGCGAGGGACCTGAGTCCCA
CCCCTCGCTGAGGGTGCAGGGCAGAGCAGGCTGGGCGAACGCGGGCCTGCGCCCTGTGCC
GTGCGGCTCCGTCCCGGCGCAGACCCGAGCCCGTGCTTGGTCGTGGAAGTGATAGCGAGT
AAAATGCAAGCACTGTGTGCCTGTTTCCTGTGGTTTTGAATGACGCCAATTTGAAGAGAA
CAATATAAAAATATTAATAAAATTGCACTTGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCCGCGCGGGCCGACGGACGGCGACCATGGCGCCCTGGCGGCCCGGAAGCAAGACGGT
CCTCCTTCCTCTCCGCCGCGCCTTTTCAGGCCGTGGCTGTCAGCTCGCCCCCGAGCGCAG
CGCTGAGCGCAGGGATGCAGCGCCCAGCCGCGTCTCAAGTTTCTGCCCTCCAAGAAAATC
TTGCCATGATTGGATAGGACCCCCAGATAAATATTCAAACCTTCGACCTGTTCACTTTTA
CATCCCTGAAAATGAGTCACCACTGGAACAAAAGCTAAGAGAATTAAGACAAGAAACACA
GGAATGGAACCAACAGTTCTGGGCGAACCAAAATTTGACTTTTCATAAGGAAAAAGAAGA
ATTTATTCACTCAAGACTGAAAGCTAAAGGCCTGGGACTGACAGCGGAACCAGGTGCAAA
AGCAACATTGAATGCAGAAGAAATGGCTGAGTTTTACAAGGAATTTCTGAGTAAAAATTT
TCAGAAGCACATGTATTATAACAGGGACTGGTACAAGCGTAATTTTGCCATCACCTTCTT
CATGGCAAAAGTGGCCTTGGAGAGGATCTGGAGCAAGCTTCCACTGAAACAAAAGAAGAG
CAGCGCCTAGGAGCCCGCCGGGGCCCACACGCCCTGCGTCCGAGGGTCCGTGAGAGAAGC
AGCTGCTTGCAGGCGCTCGCCTTCCGAGGGCTCTGAACCCTGCGAGGGACCTGAGTCCCA
CCCCTCGCTGAGGGTGCAGGGCAGAGCAGGCTGGGCGAACGCGGGCCTGCGCCCTGTGCC
GTGCGGCTCCGTCCCGGCGCAGACCCGAGCCCGTGCTTGGTCGTGGAAGTGATAGCGAGT
AAAATGCAAGCACTGTGTGCCTGTTTCCTGTGGTTTTGAATGACGCCAATTTGAAGAGAA
CAATATAAAAATATTAATAAAATTGCACTTGAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|14150183|ref|NP_115750.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14150183|ref|NP_115750.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               152-350, gnl|bosTau2|chr21 (48036864-48037062)
               

               
               152-350, gnl|Hg17|chr14 (103107713-103107911)
               

               
               152-350, gnl|Mm7|chr12 (109245108-109245306)
               


               
               503-702, gnl|bosTau2|chr21 (48047267-48047468)
               

               
               503-702, gnl|Hg17|chr14 (103126269-103126492)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               152-350, gnl|bosTau2|chr21 (48036864-48037062)
               

               
               152-350, gnl|Hg17|chr14 (103107713-103107911)
               

               
               152-350, gnl|Mm7|chr12 (109245108-109245306)
               


               
               503-702, gnl|bosTau2|chr21 (48047267-48047468)
               

               
               503-702, gnl|Hg17|chr14 (103126269-103126492)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               fce (0.543183)
               

               
               jej (0.395687)
               

               
               cga (0.279096)
               

               
               pla (0.267344)
               

               
               ebs (0.236602)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               lun (0.150489)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               jej (0.395687)
               

               
               cga (0.279096)
               

               
               pla (0.267344)
               

               
               ebs (0.236602)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               lun (0.150489)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)

	152-350, gnl\|bosTau2\|chr21 (48036864-48037062)
	152-350, gnl\|Hg17\|chr14 (103107713-103107911)
	152-350, gnl\|Mm7\|chr12 (109245108-109245306)

	503-702, gnl\|bosTau2\|chr21 (48047267-48047468)
	503-702, gnl\|Hg17\|chr14 (103126269-103126492)

	fce (0.543183)
	jej (0.395687)
	cga (0.279096)
	pla (0.267344)
	ebs (0.236602)
	ton (0.1755)
	fbs (0.175346)
	duo (0.172801)
	lun (0.150489)
	bla (0.124347)
	ecc (0.115035)