Ss1.1-rebs15c_d12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAATGAGAAGGGGGCTGCCCAAGGACTGCTCTCTGATTCTGCCCACTTTGCCCCCATCC AGTGCCAGGTCACCAGATGGAAAGCGAAAAAGAAAGAACGGCCAATGTTCCCTGAAAACC AGCATGTCAGGTGAGCCTGGCTGCGTGTGCTCTTCCTCCCCACCCTGAACCCCAGCAAAC CAGGCCAGGGCTCTTCCGGGGCCTGGGCGTGCACCCGCAATTCCTGTGTCCCGTGGGAAG AGCCTCTGAGAGAGCTTGGGAAGGATGTGTCTGGGATGAGAGGGGAGATGCGAGGCGCGC CTCGCCCTTTGAGGATGGGTTTGGTCAGGAAGGGCCTCTTCCCTTCTCACGTAACCCTCT TGCCTGAGGTCCCTGAGGCCAGCTGCTGCTGGCGGGGGCTGCTCCTTCTCCCATATCCCC TGCCCCTTGGATGCAGCAAGAGAAAAGCCCTAACTGGGCAGTCGGAAGAACTGGGATTCT GGTTATCTTTAGGGGGGCCAGTGTGCCCACCCCAGTCTCTTGGCGTGCTGGAGGGCATCC TGGATGGAATTGAAGTGAATGGAACAGAAGCCAAGCAAGGTGGAGTGTGGGTCAGACCCA GAGGAGAACAGTGCCAGGTCACCAGATGGAAAGCGAAAAAGAAAGAACGGCCAATGTTCC CTGAAAACCAGCATGTCAGGGTATATCCCTAGTTACCTGGACAAAGACGAGCAGTGTGTC GTGTGTGGGGACAAGGCAACCGGTTATCACTACCGCTGCATCACTTGTGAGGGCTGCAAG GGCTTCTTTCGCCGCACAATCCAGAAGAATCTCCATCCCACCTACTCATGCAAGTATGAC AGCTGCTGTGTCATTGACAAGATCACCCGCAATCAGTGCCAGCTGTGCCGCTTCAAGAAG TGCATCGCTGTGGGCATGGCCATGGACTTGGTTCTAGATGATTCGAAGCGGGTGGCCAAG CGCAAGCTGATCGAGCAGAACCGGGAGCGGCGCAGGAAGGAGGAGATGATCCGATCACTG CAGCAGCGACCGGAGCCCACTCCGGAAGAGTGGGACCTGATCCACGTTGCCACGGAGGCC CATCGCAGCACAAACGCCCAGGGCAGCCACTGGAAGCAGAGGAGGAAATTCCTGCCGGAT GACATTGGCCAGTCACCCATCGTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAATGAGAAGGGGGCTGCCCAAGGACTGCTCTCTGATTCTGCCCACTTTGCCCCCATCC AGTGCCAGGTCACCAGATGGAAAGCGAAAAAGAAAGAACGGCCAATGTTCCCTGAAAACC AGCATGTCAGGTGAGCCTGGCTGCGTGTGCTCTTCCTCCCCACCCTGAACCCCAGCAAAC CAGGCCAGGGCTCTTCCGGGGCCTGGGCGTGCACCCGCAATTCCTGTGTCCCGTGGGAAG AGCCTCTGAGAGAGCTTGGGAAGGATGTGTCTGGGATGAGAGGGGAGATGCGAGGCGCGC CTCGCCCTTTGAGGATGGGTTTGGTCAGGAAGGGCCTCTTCCCTTCTCACGTAACCCTCT TGCCTGAGGTCCCTGAGGCCAGCTGCTGCTGGCGGGGGCTGCTCCTTCTCCCATATCCCC TGCCCCTTGGATGCAGCAAGAGAAAAGCCCTAACTGGGCAGTCGGAAGAACTGGGATTCT GGTTATCTTTAGGGGGGCCAGTGTGCCCACCCCAGTCTCTTGGCGTGCTGGAGGGCATCC TGGATGGAATTGAAGTGAATGGAACAGAAGCCAAGCAAGGTGGAGTGTGGGTCAGACCCA GAGGAGAACAGTGCCAGGTCACCAGATGGAAAGCGAAAAAGAAAGAACGGCCAATGTTCC CTGAAAACCAGCATGTCAGGGTATATCCCTAGTTACCTGGACAAAGACGAGCAGTGTGTC GTGTGTGGGGACAAGGCAACCGGTTATCACTACCGCTGCATCACTTGTGAGGGCTGCAAG GGCTTCTTTCGCCGCACAATCCAGAAGAATCTCCATCCCACCTACTCATGCAAGTATGAC AGCTGCTGTGTCATTGACAAGATCACCCGCAATCAGTGCCAGCTGTGCCGCTTCAAGAAG TGCATCGCTGTGGGCATGGCCATGGACTTGGTTCTAGATGATTCGAAGCGGGTGGCCAAG CGCAAGCTGATCGAGCAGAACCGGGAGCGGCGCAGGAAGGAGGAGATGATCCGATCACTG CAGCAGCGACCGGAGCCCACTCCGGAAGAGTGGGACCTGATCCACGTTGCCACGGAGGCC CATCGCAGCACAAACGCCCAGGGCAGCCACTGGAAGCAGAGGAGGAAATTCCTGCCGGAT GACATTGGCCAGTCACCCATCGTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 235-378, + strand, RNAz p=0.663587 | |
| 402-494, - strand, RNAz p=0.679467 | |
| 968-1134, - strand, RNAz p=0.9893 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 235-378, + strand, RNAz p=0.663587 | |
| 402-494, - strand, RNAz p=0.679467 | |
| 968-1134, - strand, RNAz p=0.9893 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-494, gnl|bosTau2|chr19 (34520642-34520143) | |
| 1-494, gnl|Hg17|chr17 (35486588-35487121) | |
| 1-494, gnl|Mm7|chr11 (98865085-98865759) | |
| 779-928, gnl|bosTau2|chr19 (34517933-34517784) | |
| 779-928, gnl|canFam2|chr9 (25804571-25804405) | |
| 779-928, gnl|danRer3|chr3 (30724379-30724541) | |
| 779-928, gnl|dasNov1|scaffold_5157 (4599-4767) | |
| 779-928, gnl|echTel1|scaffold_295851 (5015-4849) | |
| 779-928, gnl|fr1|chrUn (197684479-197684319) | |
| 779-928, gnl|galGal2|chrUn (22078425-22078589) | |
| 779-928, gnl|hg17|chr17 (35493607-35493774) | |
| 779-928, gnl|Hg17|chr17 (35493612-35493761) | |
| 779-928, gnl|loxAfr1|scaffold_22587 (66497-66663) | |
| 779-928, gnl|mm7|chr11 (98869908-98870075) | |
| 779-928, gnl|Mm7|chr11 (98869913-98870062) | |
| 779-928, gnl|monDom2|scaffold_18 (49307157-49307317) | |
| 779-928, gnl|oryCun1|scaffold_209726 (127752-127598) | |
| 779-928, gnl|panTro1|chr19 (38732784-38732952) | |
| 779-928, gnl|rheMac2|chr16 (50187746-50187914) | |
| 779-928, gnl|rn3|chr10 (87548326-87548493) | |
| 779-928, gnl|tetNig1|chrUn_random (134820772-134820927) | |
| 779-928, gnl|xenTro1|scaffold_670 (447667-447509) | |
| 929-1134, gnl|bosTau2|chr19 (34517149-34516944) | |
| 929-1134, gnl|canFam2|chr9 (25803782-25803567) | |
| 929-1134, gnl|danRer3|chr3 (30727301-30727514) | |
| 929-1134, gnl|dasNov1|scaffold_3475 (87521-87722) | |
| 929-1134, gnl|echTel1|scaffold_295851 (4248-4033) | |
| 929-1134, gnl|fr1|chrUn (197684029-197683814) | |
| 929-1134, gnl|galGal2|chrUn (22079060-22079275) | |
| 929-1134, gnl|hg17|chr17 (35494387-35494602) | |
| 929-1134, gnl|Hg17|chr17 (35494389-35494594) | |
| 929-1134, gnl|loxAfr1|scaffold_33074 (8830-8617) | |
| 929-1134, gnl|mm7|chr11 (98870758-98870973) | |
| 929-1134, gnl|Mm7|chr11 (98870760-98870965) | |
| 929-1134, gnl|monDom2|scaffold_18 (49311184-49311400) | |
| 929-1134, gnl|oryCun1|scaffold_199304 (45054-45269) | |
| 929-1134, gnl|panTro1|chr19 (38733576-38733791) | |
| 929-1134, gnl|rheMac2|chr16 (50188535-50188750) | |
| 929-1134, gnl|rn3|chr10 (87549223-87549438) | |
| 929-1134, gnl|tetNig1|chrUn_random (134821043-134821256) | |
| 929-1134, gnl|xenTro1|scaffold_670 (445418-445196) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-494, gnl|bosTau2|chr19 (34520642-34520143) | |
| 1-494, gnl|Hg17|chr17 (35486588-35487121) | |
| 1-494, gnl|Mm7|chr11 (98865085-98865759) | |
| 779-928, gnl|bosTau2|chr19 (34517933-34517784) | |
| 779-928, gnl|canFam2|chr9 (25804571-25804405) | |
| 779-928, gnl|danRer3|chr3 (30724379-30724541) | |
| 779-928, gnl|dasNov1|scaffold_5157 (4599-4767) | |
| 779-928, gnl|echTel1|scaffold_295851 (5015-4849) | |
| 779-928, gnl|fr1|chrUn (197684479-197684319) | |
| 779-928, gnl|galGal2|chrUn (22078425-22078589) | |
| 779-928, gnl|hg17|chr17 (35493607-35493774) | |
| 779-928, gnl|Hg17|chr17 (35493612-35493761) | |
| 779-928, gnl|loxAfr1|scaffold_22587 (66497-66663) | |
| 779-928, gnl|mm7|chr11 (98869908-98870075) | |
| 779-928, gnl|Mm7|chr11 (98869913-98870062) | |
| 779-928, gnl|monDom2|scaffold_18 (49307157-49307317) | |
| 779-928, gnl|oryCun1|scaffold_209726 (127752-127598) | |
| 779-928, gnl|panTro1|chr19 (38732784-38732952) | |
| 779-928, gnl|rheMac2|chr16 (50187746-50187914) | |
| 779-928, gnl|rn3|chr10 (87548326-87548493) | |
| 779-928, gnl|tetNig1|chrUn_random (134820772-134820927) | |
| 779-928, gnl|xenTro1|scaffold_670 (447667-447509) | |
| 929-1134, gnl|bosTau2|chr19 (34517149-34516944) | |
| 929-1134, gnl|canFam2|chr9 (25803782-25803567) | |
| 929-1134, gnl|danRer3|chr3 (30727301-30727514) | |
| 929-1134, gnl|dasNov1|scaffold_3475 (87521-87722) | |
| 929-1134, gnl|echTel1|scaffold_295851 (4248-4033) | |
| 929-1134, gnl|fr1|chrUn (197684029-197683814) | |
| 929-1134, gnl|galGal2|chrUn (22079060-22079275) | |
| 929-1134, gnl|hg17|chr17 (35494387-35494602) | |
| 929-1134, gnl|Hg17|chr17 (35494389-35494594) | |
| 929-1134, gnl|loxAfr1|scaffold_33074 (8830-8617) | |
| 929-1134, gnl|mm7|chr11 (98870758-98870973) | |
| 929-1134, gnl|Mm7|chr11 (98870760-98870965) | |
| 929-1134, gnl|monDom2|scaffold_18 (49311184-49311400) | |
| 929-1134, gnl|oryCun1|scaffold_199304 (45054-45269) | |
| 929-1134, gnl|panTro1|chr19 (38733576-38733791) | |
| 929-1134, gnl|rheMac2|chr16 (50188535-50188750) | |
| 929-1134, gnl|rn3|chr10 (87549223-87549438) | |
| 929-1134, gnl|tetNig1|chrUn_random (134821043-134821256) | |
| 929-1134, gnl|xenTro1|scaffold_670 (445418-445196) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.118301) |