Non-Coding RNA Search

Ss1.1-rebs15c_m13.5

Sequence:


               
               CGCAGGGCGCGCGCCGGGCGGTGCAGCTCCTAGGAGTCCGAAGGCAGCACCGCAGTGGCC
GCGGCCGCCGAGGGAGGGGCCCGGAGCCCCGCCCCCGGGGAGGGGCCGTCCGCAGGTCTC
CCATCTACCTTCCACGGCTCCAACTCCATGCCGGGATTGAAATTTAGTGACAAGAAAGGG
GCAGTTCACCCGGCATCAGAGAACTGAGACTAAGCCTAGAGCTGGGCCCTTCGTCTAGGT
TCTTGGGCCGGCAAGATGCTGGAGCGAGATGTGGAGTCGGAGGCCGGGGGCACCGATCCT
AGTCCCACTGGCAAGGAACCCGTGACCAAGGGAGAAGCTCCCAACCAGGGTCCGCCGCAG
AGGCCTAGCCAGTCGGTTCCAGGGCCCGCCACGTCCACGGGGGCACCTTCCAGACCCCGC
CGGCGGCCCCCGCCCCAGCGCCCGCACCGCTGCCCTGACTGTGACAAGGCCTTCTCATAC
CCATCCAAGCTGGCCACGCACCGGCTGGCGCACGGCGGTGCCCGCCCGCACCCGTGCCCT
GACTGTCCCAAGGCCTTCTCCTACCCCTCGAAGCTGGCGGCCCACCGCCTCACGCACAGC
GGCGCCCGCCCGCACCCGTGCCCACACTGCCCAAAGGCCTTCGGCCACCGCTCTAAGCTG
GCAGCCCACCTTTGGACCCACGCTCCTGCCCGCCCCTACCCATGCCCCGACTGTCCCAAG
TCCTTCTGCTATCCCTCCAAGCTGGCGGCCCACCGCCACACACACCATGCCACCGATGCC
CGCCCCTATCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCAGGGCGCGCGCCGGGCGGTGCAGCTCCTAGGAGTCCGAAGGCAGCACCGCAGTGGCC
GCGGCCGCCGAGGGAGGGGCCCGGAGCCCCGCCCCCGGGGAGGGGCCGTCCGCAGGTCTC
CCATCTACCTTCCACGGCTCCAACTCCATGCCGGGATTGAAATTTAGTGACAAGAAAGGG
GCAGTTCACCCGGCATCAGAGAACTGAGACTAAGCCTAGAGCTGGGCCCTTCGTCTAGGT
TCTTGGGCCGGCAAGATGCTGGAGCGAGATGTGGAGTCGGAGGCCGGGGGCACCGATCCT
AGTCCCACTGGCAAGGAACCCGTGACCAAGGGAGAAGCTCCCAACCAGGGTCCGCCGCAG
AGGCCTAGCCAGTCGGTTCCAGGGCCCGCCACGTCCACGGGGGCACCTTCCAGACCCCGC
CGGCGGCCCCCGCCCCAGCGCCCGCACCGCTGCCCTGACTGTGACAAGGCCTTCTCATAC
CCATCCAAGCTGGCCACGCACCGGCTGGCGCACGGCGGTGCCCGCCCGCACCCGTGCCCT
GACTGTCCCAAGGCCTTCTCCTACCCCTCGAAGCTGGCGGCCCACCGCCTCACGCACAGC
GGCGCCCGCCCGCACCCGTGCCCACACTGCCCAAAGGCCTTCGGCCACCGCTCTAAGCTG
GCAGCCCACCTTTGGACCCACGCTCCTGCCCGCCCCTACCCATGCCCCGACTGTCCCAAG
TCCTTCTGCTATCCCTCCAAGCTGGCGGCCCACCGCCACACACACCATGCCACCGATGCC
CGCCCCTATCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61883869|ref|XP_580715.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61883869|ref|XP_580715.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               655-774, - strand, RNAz p=0.646223

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               655-774, - strand, RNAz p=0.646223

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               5-117, gnl|bosTau2|chr18 (46318774-46318662)
               

               
               5-117, gnl|canFam2|chr1 (114471424-114470789)
               

               
               5-117, gnl|dasNov1|scaffold_7145 (92915-92287)
               

               
               5-117, gnl|echTel1|scaffold_207282 (3314-4023)
               

               
               5-117, gnl|hg17|chr19 (48729180-48729835)
               

               
               5-117, gnl|Hg17|chr19 (48729388-48729515)
               

               
               5-117, gnl|loxAfr1|scaffold_8173 (81824-82435)
               

               
               5-117, gnl|mm7|chr7 (21375801-21375225)
               

               
               5-117, gnl|Mm7|chr7 (21375591-21375478)
               

               
               5-117, gnl|oryCun1|scaffold_199938 (40808-40341)
               

               
               5-117, gnl|panTro1|chr20 (45662229-45662884)
               

               
               5-117, gnl|rn3|chr1 (79946975-79946415)
               


               
               336-792, gnl|bosTau2|chr18 (46317304-46316848)
               

               
               336-792, gnl|Hg17|chr19 (48731019-48731475)
               

               
               336-792, gnl|Mm7|chr7 (21374169-21373728)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-117, gnl|bosTau2|chr18 (46318774-46318662)
               

               
               5-117, gnl|canFam2|chr1 (114471424-114470789)
               

               
               5-117, gnl|dasNov1|scaffold_7145 (92915-92287)
               

               
               5-117, gnl|echTel1|scaffold_207282 (3314-4023)
               

               
               5-117, gnl|hg17|chr19 (48729180-48729835)
               

               
               5-117, gnl|Hg17|chr19 (48729388-48729515)
               

               
               5-117, gnl|loxAfr1|scaffold_8173 (81824-82435)
               

               
               5-117, gnl|mm7|chr7 (21375801-21375225)
               

               
               5-117, gnl|Mm7|chr7 (21375591-21375478)
               

               
               5-117, gnl|oryCun1|scaffold_199938 (40808-40341)
               

               
               5-117, gnl|panTro1|chr20 (45662229-45662884)
               

               
               5-117, gnl|rn3|chr1 (79946975-79946415)
               


               
               336-792, gnl|bosTau2|chr18 (46317304-46316848)
               

               
               336-792, gnl|Hg17|chr19 (48731019-48731475)
               

               
               336-792, gnl|Mm7|chr7 (21374169-21373728)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	5-117, gnl\|bosTau2\|chr18 (46318774-46318662)
	5-117, gnl\|canFam2\|chr1 (114471424-114470789)
	5-117, gnl\|dasNov1\|scaffold_7145 (92915-92287)
	5-117, gnl\|echTel1\|scaffold_207282 (3314-4023)
	5-117, gnl\|hg17\|chr19 (48729180-48729835)
	5-117, gnl\|Hg17\|chr19 (48729388-48729515)
	5-117, gnl\|loxAfr1\|scaffold_8173 (81824-82435)
	5-117, gnl\|mm7\|chr7 (21375801-21375225)
	5-117, gnl\|Mm7\|chr7 (21375591-21375478)
	5-117, gnl\|oryCun1\|scaffold_199938 (40808-40341)
	5-117, gnl\|panTro1\|chr20 (45662229-45662884)
	5-117, gnl\|rn3\|chr1 (79946975-79946415)

	336-792, gnl\|bosTau2\|chr18 (46317304-46316848)
	336-792, gnl\|Hg17\|chr19 (48731019-48731475)
	336-792, gnl\|Mm7\|chr7 (21374169-21373728)