Ss1.1-rebs16c_a17.5
|
GGTGGGTGCTGCTTGTGGTTTAGTTTTTCTTTCTTCCTTTCTTTTTTTTTTTTTTTTTTT
TTTTTAATTCAACCTGGAATCAGAAAGCTGTGGATTCTGGCAAATGGTCCTTGTGCCCTT
CCCACACTCGTCCCTGGTCTGGTCCCTTACTCCCCCATAGCCCTTTATCCCAAGCACCAC
CCCAACAGACTGGGGACCAGCCCCCTCCCCTGCTGATGTCTCTCCCCAAGTCCCTTTAGA
TGGAGAGGGAAGAGGAGGAGAGGGGAGGGGACCTGCCCCCTCCTCAGGCATCTGGGAGGG
CCCTGCCCCCCATGGGCTTCACCCTTTCCTGCGGGCTCTCTCCCCGACACATTTGTTAAA
AATCAAACCTGAATAAAACTACAAGTTTAATATGAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGTGGGTGCTGCTTGTGGTTTAGTTTTTCTTTCTTCCTTTCTTTTTTTTTTTTTTTTTTT
TTTTTAATTCAACCTGGAATCAGAAAGCTGTGGATTCTGGCAAATGGTCCTTGTGCCCTT
CCCACACTCGTCCCTGGTCTGGTCCCTTACTCCCCCATAGCCCTTTATCCCAAGCACCAC
CCCAACAGACTGGGGACCAGCCCCCTCCCCTGCTGATGTCTCTCCCCAAGTCCCTTTAGA
TGGAGAGGGAAGAGGAGGAGAGGGGAGGGGACCTGCCCCCTCCTCAGGCATCTGGGAGGG
CCCTGCCCCCCATGGGCTTCACCCTTTCCTGCGGGCTCTCTCCCCGACACATTTGTTAAA
AATCAAACCTGAATAAAACTACAAGTTTAATATGAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
190-288, - strand, RNAmicro p=0.999997 |
|
205-270, + strand, RNAmicro p=0.996795 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
190-288, - strand, RNAmicro p=0.999997 |
|
205-270, + strand, RNAmicro p=0.996795 |
|
272-240, DB809745 full-length enriched swine cDNA library, adult liver Sus
(dbj|DB809745.1|), blast E-value=2e-39, identity=100% |
|
272-240, DB811798 full-length enriched swine cDNA library, adult ovary Sus
(dbj|DB811798.1|), blast E-value=2e-39, identity=100% |
|
272-240, DB812903 full-length enriched swine cDNA library, adult ovary Sus
(dbj|DB812903.1|), blast E-value=4e-37, identity=98.84% |
|
272-240, DB815201 full-length enriched swine cDNA library, adult ovary Sus
(dbj|DB815201.1|), blast E-value=4e-37, identity=98.84% |
|
272-240, DB815860 full-length enriched swine cDNA library, adult periphral
(dbj|DB815860.1|), blast E-value=3e-31, identity=96.51% |
|
272-240, DB818925 full-length enriched swine cDNA library, adult thymus Sus
(dbj|DB818925.1|), blast E-value=2e-39, identity=100% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
272-240, DB809745 full-length enriched swine cDNA library, adult liver Sus
(dbj|DB809745.1|), blast E-value=2e-39, identity=100% |
|
272-240, DB811798 full-length enriched swine cDNA library, adult ovary Sus
(dbj|DB811798.1|), blast E-value=2e-39, identity=100% |
|
272-240, DB812903 full-length enriched swine cDNA library, adult ovary Sus
(dbj|DB812903.1|), blast E-value=4e-37, identity=98.84% |
|
272-240, DB815201 full-length enriched swine cDNA library, adult ovary Sus
(dbj|DB815201.1|), blast E-value=4e-37, identity=98.84% |
|
272-240, DB815860 full-length enriched swine cDNA library, adult periphral
(dbj|DB815860.1|), blast E-value=3e-31, identity=96.51% |
|
272-240, DB818925 full-length enriched swine cDNA library, adult thymus Sus
(dbj|DB818925.1|), blast E-value=2e-39, identity=100% |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
ece (0.687916) |
|
cbr (0.511902) |
|
eru (0.360144) |
|
jca (0.34188) |
|
ese (0.253004) |
|
ebs (0.236602) |
|
mas (0.210305) |
|
fli (0.202881) |
|
jej (0.197844) |
|
eje (0.197668) |
|
fty (0.17584) |
|
ton (0.1755) |
|
nje (0.16592) |
|
cli (0.152812) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
nca (0.136874) |
|
nmm (0.132802) |
|
eep (0.122564) |
|
clu (0.119646) |
|
ece (0.687916) |
|
cbr (0.511902) |
|
eru (0.360144) |
|
jca (0.34188) |
|
ese (0.253004) |
|
ebs (0.236602) |
|
mas (0.210305) |
|
fli (0.202881) |
|
jej (0.197844) |
|
eje (0.197668) |
|
fty (0.17584) |
|
ton (0.1755) |
|
nje (0.16592) |
|
cli (0.152812) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
nca (0.136874) |
|
nmm (0.132802) |
|
eep (0.122564) |
|
clu (0.119646) |