Non-Coding RNA Search

Ss1.1-rebs16c_g3.5

Sequence:


               
               GCGTCACCAGGATCACCATCCAGAAGTCCAAGAACATCCTCTTCGTCATCGCCAAGCCCG
ACGTCTTCAAGAGCCCGGCCTCCGACACCTACGTGGTCTTCGGGGAGGCCAAGATCGAGG
ACCTGTCGCAGCAGGTGCACAGAGCTGCTGCCGAGAAGTTCAAGGTGCCCTCCGAGCCCT
CCCCGCTGGTCCCCGAGTCAGCACCTGGGCCGAGGGTGAGGCCAGAGTGCGAGGAGGAAG
AGGAGGAGGAGGAGGAGGAGGTGGACGAGGCGGGGCTGGAGCTTCGGGACATTGAGCTGG
TGATGGCACAGGCCAACGTGTCAAGGGCCAAGGCTGTGCGGGCCTTGAGAGACAACCAGA
GCGACATTGTCAACGCCATCATGGAGCTGACGATGTAGCTGCTGACCCGCGACTCGGCGC
CACCCCTGCCCCCAAGCCCTGCTGCTCAATAAATGGGTGTCCCTCAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGTCACCAGGATCACCATCCAGAAGTCCAAGAACATCCTCTTCGTCATCGCCAAGCCCG
ACGTCTTCAAGAGCCCGGCCTCCGACACCTACGTGGTCTTCGGGGAGGCCAAGATCGAGG
ACCTGTCGCAGCAGGTGCACAGAGCTGCTGCCGAGAAGTTCAAGGTGCCCTCCGAGCCCT
CCCCGCTGGTCCCCGAGTCAGCACCTGGGCCGAGGGTGAGGCCAGAGTGCGAGGAGGAAG
AGGAGGAGGAGGAGGAGGAGGTGGACGAGGCGGGGCTGGAGCTTCGGGACATTGAGCTGG
TGATGGCACAGGCCAACGTGTCAAGGGCCAAGGCTGTGCGGGCCTTGAGAGACAACCAGA
GCGACATTGTCAACGCCATCATGGAGCTGACGATGTAGCTGCTGACCCGCGACTCGGCGC
CACCCCTGCCCCCAAGCCCTGCTGCTCAATAAATGGGTGTCCCTCAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|48734620|gb|AAH72044.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|48734620|gb|AAH72044.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               112-271, + strand, RNAz p=0.98966

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               112-271, + strand, RNAz p=0.98966

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-397, gnl|bosTau2|chr5 (33928220-33927844)
               

               
               3-397, gnl|Hg17|chr4 (166222317-166222693)
               

               
               3-397, gnl|Mm7|chr4 (52835577-52835935)
               


               
               112-271, gnl|bosTau2|chr4 (43255103-43254945)
               

               
               112-271, gnl|Hg17|chr7 (44893863-44893708)
               

               
               112-271, gnl|Mm7|chr11 (6550418-6550266)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-397, gnl|bosTau2|chr5 (33928220-33927844)
               

               
               3-397, gnl|Hg17|chr4 (166222317-166222693)
               

               
               3-397, gnl|Mm7|chr4 (52835577-52835935)
               


               
               112-271, gnl|bosTau2|chr4 (43255103-43254945)
               

               
               112-271, gnl|Hg17|chr7 (44893863-44893708)
               

               
               112-271, gnl|Mm7|chr11 (6550418-6550266)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fbs (0.350693)
               

               
               fhi (0.339155)
               

               
               fce (0.271592)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.350693)
               

               
               fhi (0.339155)
               

               
               fce (0.271592)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	3-397, gnl\|bosTau2\|chr5 (33928220-33927844)
	3-397, gnl\|Hg17\|chr4 (166222317-166222693)
	3-397, gnl\|Mm7\|chr4 (52835577-52835935)

	112-271, gnl\|bosTau2\|chr4 (43255103-43254945)
	112-271, gnl\|Hg17\|chr7 (44893863-44893708)
	112-271, gnl\|Mm7\|chr11 (6550418-6550266)

	fbs (0.350693)
	fhi (0.339155)
	fce (0.271592)
	hyp (0.142837)
	ebs (0.118301)
	ecc (0.115035)