Non-Coding RNA Search

Ss1.1-rebs16c_m3.5

Sequence:


               
               GAAGCTGATTCTGTGACAGAAACACAGTTCTATGCAAGCACAGATGCGGCGGGTGGAGTG
GTGGTGATGTGAGCGCATTGCGGAGGGCTTCTGTGTGCAGGTTTTTCTCTGGGCTCGGGG
TGCCTTGATTGTAAGCAGGTCGAGACCTTTCTTCGTGGCTGTGTTTTTGCTCTGGTCTTA
GCTTTGGGTTTGCCCTTTAAGCAAATACTCTGGCATCCAGAAGACTGGCAGACTGTTCCA
GGGCTGGGACTGCAGATATATTGTGTTCTGCTTGCGGTTGCAGCGGGTGGCAGGGAGGGG
AGCAAGCTGCAAGGGAGGAGGGAGGTGTTTGTCCCCTATTGCTGTAGAGCCCTGGGCACC
TGACAAGCTTAAGGAAGTCATTGAGATACAGGAGGAGGAAGCACCCAACTCCTAGACCCT
TCACAAACTCCATCAGTGCTGAAAGTATGGCCAGGACTCACTTCTCCCTTGCAGCTGTAA
TTACAGTTTCAGGCCGAGATCCAGGAGCTGCAGAGGAAGGGAGAGGCGCAGTAACCTACA
TGTACCCAAGGGGTGGGGGGGTGGGGAGATCTGCATTCATTTTTAAAATCTGAGCGAAAG
GAAAAACAAGGTGTACAGGTGGGGGTCTGAGGAAAGACTGTTTTTGAAAGAGGTTATCAG
GGAATGGAAAAGGTTAATCCTCCCTCGTTCTGGAGAATCTGCTTCCCAAATCAGCCCTTC
TCTCCATCACCAGACCTGGGGCAGCAGCTGGTCTTAGAGATACCCCTGTGCTCCACACTC
CATCATCCCCCCTAACTCACCTCCAGCTCTGTATTAACCAGTGGATAATGGTGAGACTTA
AACTCATTAATTTCCAGGTGGAGAAAATGGAGGAGGGGCAGGTCTCTATAGAGAAAGGAG
GCCAAGAACTGGATCTTCCTACCTAGGAAGACTGCTGCATCCCTTTCCCAGCCCTTGGCA
GAGGCCTGTCTTTGCAAGGCCAAGGCCGTAAGGGATGCTTGGAATTTTAGTTTGTTTCTG
ACAAAGTAGTCAAGGCCTAAAAGATTCTCAGTTGAAGCTCACTGAGGAGAGCTCTATTTT
CTCCAAAGCCTCAGTCTAGTCCACTAAATAAATGAGTGATCATGGATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGCTGATTCTGTGACAGAAACACAGTTCTATGCAAGCACAGATGCGGCGGGTGGAGTG
GTGGTGATGTGAGCGCATTGCGGAGGGCTTCTGTGTGCAGGTTTTTCTCTGGGCTCGGGG
TGCCTTGATTGTAAGCAGGTCGAGACCTTTCTTCGTGGCTGTGTTTTTGCTCTGGTCTTA
GCTTTGGGTTTGCCCTTTAAGCAAATACTCTGGCATCCAGAAGACTGGCAGACTGTTCCA
GGGCTGGGACTGCAGATATATTGTGTTCTGCTTGCGGTTGCAGCGGGTGGCAGGGAGGGG
AGCAAGCTGCAAGGGAGGAGGGAGGTGTTTGTCCCCTATTGCTGTAGAGCCCTGGGCACC
TGACAAGCTTAAGGAAGTCATTGAGATACAGGAGGAGGAAGCACCCAACTCCTAGACCCT
TCACAAACTCCATCAGTGCTGAAAGTATGGCCAGGACTCACTTCTCCCTTGCAGCTGTAA
TTACAGTTTCAGGCCGAGATCCAGGAGCTGCAGAGGAAGGGAGAGGCGCAGTAACCTACA
TGTACCCAAGGGGTGGGGGGGTGGGGAGATCTGCATTCATTTTTAAAATCTGAGCGAAAG
GAAAAACAAGGTGTACAGGTGGGGGTCTGAGGAAAGACTGTTTTTGAAAGAGGTTATCAG
GGAATGGAAAAGGTTAATCCTCCCTCGTTCTGGAGAATCTGCTTCCCAAATCAGCCCTTC
TCTCCATCACCAGACCTGGGGCAGCAGCTGGTCTTAGAGATACCCCTGTGCTCCACACTC
CATCATCCCCCCTAACTCACCTCCAGCTCTGTATTAACCAGTGGATAATGGTGAGACTTA
AACTCATTAATTTCCAGGTGGAGAAAATGGAGGAGGGGCAGGTCTCTATAGAGAAAGGAG
GCCAAGAACTGGATCTTCCTACCTAGGAAGACTGCTGCATCCCTTTCCCAGCCCTTGGCA
GAGGCCTGTCTTTGCAAGGCCAAGGCCGTAAGGGATGCTTGGAATTTTAGTTTGTTTCTG
ACAAAGTAGTCAAGGCCTAAAAGATTCTCAGTTGAAGCTCACTGAGGAGAGCTCTATTTT
CTCCAAAGCCTCAGTCTAGTCCACTAAATAAATGAGTGATCATGGATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               817-1018, + strand, RNAz p=0.952269

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               817-1018, + strand, RNAz p=0.952269

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1126, gnl|bosTau2|chr18 (6761965-6760849)
               

               
               1-1126, gnl|Hg17|chr8 (9798089-9796949)
               

               
               1-1126, gnl|Mm7|chr14 (59452270-59453417)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1126, gnl|bosTau2|chr18 (6761965-6760849)
               

               
               1-1126, gnl|Hg17|chr8 (9798089-9796949)
               

               
               1-1126, gnl|Mm7|chr14 (59452270-59453417)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)
               

               
               ecc (0.115035)

	1-1126, gnl\|bosTau2\|chr18 (6761965-6760849)
	1-1126, gnl\|Hg17\|chr8 (9798089-9796949)
	1-1126, gnl\|Mm7\|chr14 (59452270-59453417)