Non-Coding RNA Search

Ss1.1-rebs17c_b2.5

Sequence:


               
               GCACAAACACCTGCCCGGGCCCGGCTCCGCTCCCTCCTCCCTCCTCCCCCTCCCTTTTTC
CCCGCCCCGGCCGGAAGGCTCCGGCCTCGGCCACAGGAGCTTCGCGGCTGCGTCACCGCC
GCCCCCTCAGACAAGATGGACACCGCCGAGGAAGACATATGTAGAGTGTGTCGGTCAGAG
GGAACACCTGAGAAACCTCTTTATCATCCTTGTGTATGTACTGGCAGTATTAAGTTTATC
CATCAAGAATGCTTAGTTCAGTGGCTGAAACACAGTCGAAAAGAATACTGTGAATTATGC
AAGCACAGATTTGCTTTCACACCAATTTATTCCCCAGATATGCCTTCACGGCTTCCAATC
CAAGACATATTTGCTGGTCTGGTTACAAGTATTGGCACTGCAATACGATATTGGTTTCAT
TATACACTTGTGGCCTTCGCATGGTTAGGAGTTGTTCCTCTTACAGCATGCCGCATCTAC
AAGTGCTTGTTTACTGGCTCTGTGAGCTCACTACTGACACTGCCACTAGACATGCTGTCC
ACGGACAATTTATTGGCGGATTGTTTGCAGGGTTGTTTTGTGGTGACATGCACACTCTGT
GCGTTCATCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACAAACACCTGCCCGGGCCCGGCTCCGCTCCCTCCTCCCTCCTCCCCCTCCCTTTTTC
CCCGCCCCGGCCGGAAGGCTCCGGCCTCGGCCACAGGAGCTTCGCGGCTGCGTCACCGCC
GCCCCCTCAGACAAGATGGACACCGCCGAGGAAGACATATGTAGAGTGTGTCGGTCAGAG
GGAACACCTGAGAAACCTCTTTATCATCCTTGTGTATGTACTGGCAGTATTAAGTTTATC
CATCAAGAATGCTTAGTTCAGTGGCTGAAACACAGTCGAAAAGAATACTGTGAATTATGC
AAGCACAGATTTGCTTTCACACCAATTTATTCCCCAGATATGCCTTCACGGCTTCCAATC
CAAGACATATTTGCTGGTCTGGTTACAAGTATTGGCACTGCAATACGATATTGGTTTCAT
TATACACTTGTGGCCTTCGCATGGTTAGGAGTTGTTCCTCTTACAGCATGCCGCATCTAC
AAGTGCTTGTTTACTGGCTCTGTGAGCTCACTACTGACACTGCCACTAGACATGCTGTCC
ACGGACAATTTATTGGCGGATTGTTTGCAGGGTTGTTTTGTGGTGACATGCACACTCTGT
GCGTTCATCAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61862498|ref|XP_595596.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61862498|ref|XP_595596.1|

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-154, gnl|bosTau2|chr20 (37994259-37994103)
               

               
               1-154, gnl|canFam2|chr8 (36626358-36626486)
               

               
               1-154, gnl|hg17|chr5 (10406906-10407028)
               

               
               1-154, gnl|loxAfr1|scaffold_84117 (6816-6687)
               

               
               1-154, gnl|mm7|chr15 (31643074-31642921)
               

               
               1-154, gnl|Mm7|chr15 (31643073-31642918)
               

               
               1-154, gnl|monDom2|scaffold_4 (30210823-30210962)
               

               
               1-154, gnl|oryCun1|scaffold_160870 (11102-10947)
               

               
               1-154, gnl|panTro1|chr4 (10806710-10806832)
               

               
               1-154, gnl|rheMac2|chr6 (10286141-10286264)
               

               
               1-154, gnl|rn3|chr2 (83567175-83567031)
               


               
               323-470, gnl|bosTau2|chr20 (37737725-37737578)
               

               
               323-470, gnl|Hg17|chr5 (10434909-10435056)
               

               
               323-470, gnl|Mm7|chr15 (31614981-31614834)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-154, gnl|bosTau2|chr20 (37994259-37994103)
               

               
               1-154, gnl|canFam2|chr8 (36626358-36626486)
               

               
               1-154, gnl|hg17|chr5 (10406906-10407028)
               

               
               1-154, gnl|loxAfr1|scaffold_84117 (6816-6687)
               

               
               1-154, gnl|mm7|chr15 (31643074-31642921)
               

               
               1-154, gnl|Mm7|chr15 (31643073-31642918)
               

               
               1-154, gnl|monDom2|scaffold_4 (30210823-30210962)
               

               
               1-154, gnl|oryCun1|scaffold_160870 (11102-10947)
               

               
               1-154, gnl|panTro1|chr4 (10806710-10806832)
               

               
               1-154, gnl|rheMac2|chr6 (10286141-10286264)
               

               
               1-154, gnl|rn3|chr2 (83567175-83567031)
               


               
               323-470, gnl|bosTau2|chr20 (37737725-37737578)
               

               
               323-470, gnl|Hg17|chr5 (10434909-10435056)
               

               
               323-470, gnl|Mm7|chr15 (31614981-31614834)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.236602)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)

	1-154, gnl\|bosTau2\|chr20 (37994259-37994103)
	1-154, gnl\|canFam2\|chr8 (36626358-36626486)
	1-154, gnl\|hg17\|chr5 (10406906-10407028)
	1-154, gnl\|loxAfr1\|scaffold_84117 (6816-6687)
	1-154, gnl\|mm7\|chr15 (31643074-31642921)
	1-154, gnl\|Mm7\|chr15 (31643073-31642918)
	1-154, gnl\|monDom2\|scaffold_4 (30210823-30210962)
	1-154, gnl\|oryCun1\|scaffold_160870 (11102-10947)
	1-154, gnl\|panTro1\|chr4 (10806710-10806832)
	1-154, gnl\|rheMac2\|chr6 (10286141-10286264)
	1-154, gnl\|rn3\|chr2 (83567175-83567031)

	323-470, gnl\|bosTau2\|chr20 (37737725-37737578)
	323-470, gnl\|Hg17\|chr5 (10434909-10435056)
	323-470, gnl\|Mm7\|chr15 (31614981-31614834)