Non-Coding RNA Search

Ss1.1-rebs17c_c21.5

Sequence:


               
               CCCAAAGGACGTCAAAATCAAGATCTCGGCCCCTCAGGAACGGCTATACTCGACGGGGAT
CGGGTGAGGTGGGGCTCACGGGGAGGGCTCGGGGAGGAGACCATGGTGCCCTGGACATTT
CTCCCCGGGTTGGCCCAGGCAAGGTGGAGGTGGGTGGATTTCCCTCCCAGGTAAGGGAAA
TGGAGCTCCAGACACCCTGGGAGAACGGAGGGCTCAGCCCTCAGGTCCACAGGAATGCTC
TCCCTCCCCCCTCTCAGCGGCTCCATCCTAGCCTCGCTGGACACTTTCAAGAAGATGTGG
GTATCCAAAAAGGAATATGAAGAGGATGGCTCCCGGGCTATTCATCGTAAAACGTTCTAG
CGCCCAAAGAGGAAGGTGGAGGGAGGGGAGGATGGGAGGAGAGGAGGCCAGAGTCCTTAA
CCTTTTCTGGTCCAGGTTCACAACCTAGGCCTCGGGTCCCTGTGTGCCCTGCTTCCTGGG
CAGGTGGTGCAGCAGTGCTTTCCTGCAGCCCATACACACACACACACACACACACAGAGG
CATGCACACACAGGCACGCACACACACACACAGTAACATTTATCTGCATGGATGGAGGCT
TGAGCTGGCATAGAATGGACGAGCCCATCTTTGGGCTGTCTGGGTGTCCACCTTGGCAAG
CCAGTTAGGCCTACAGCTCCTTGCTCTGCCCCTTGGGGCTGCTTCCCCATGGCCAGACAC
CCAAACATCATTGATAGGATCCCTCCCAGGGCTGGAGCTCCTGGATGGCTGTGTAACTAC
CCTTGGAGAGAGGGGTGAGAAGAGGGGGCTACCCACTCCTGTGTCACTGCTTCTTGTGCC
ACCACTTCTTCCTGGCCTGACAGGGTAACCCTCAGGCCACACCTAGGCATCCACACTGCA
TTCACATCCTGCCCACTCACCTTTCTGGGTGGATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAAAGGACGTCAAAATCAAGATCTCGGCCCCTCAGGAACGGCTATACTCGACGGGGAT
CGGGTGAGGTGGGGCTCACGGGGAGGGCTCGGGGAGGAGACCATGGTGCCCTGGACATTT
CTCCCCGGGTTGGCCCAGGCAAGGTGGAGGTGGGTGGATTTCCCTCCCAGGTAAGGGAAA
TGGAGCTCCAGACACCCTGGGAGAACGGAGGGCTCAGCCCTCAGGTCCACAGGAATGCTC
TCCCTCCCCCCTCTCAGCGGCTCCATCCTAGCCTCGCTGGACACTTTCAAGAAGATGTGG
GTATCCAAAAAGGAATATGAAGAGGATGGCTCCCGGGCTATTCATCGTAAAACGTTCTAG
CGCCCAAAGAGGAAGGTGGAGGGAGGGGAGGATGGGAGGAGAGGAGGCCAGAGTCCTTAA
CCTTTTCTGGTCCAGGTTCACAACCTAGGCCTCGGGTCCCTGTGTGCCCTGCTTCCTGGG
CAGGTGGTGCAGCAGTGCTTTCCTGCAGCCCATACACACACACACACACACACACAGAGG
CATGCACACACAGGCACGCACACACACACACAGTAACATTTATCTGCATGGATGGAGGCT
TGAGCTGGCATAGAATGGACGAGCCCATCTTTGGGCTGTCTGGGTGTCCACCTTGGCAAG
CCAGTTAGGCCTACAGCTCCTTGCTCTGCCCCTTGGGGCTGCTTCCCCATGGCCAGACAC
CCAAACATCATTGATAGGATCCCTCCCAGGGCTGGAGCTCCTGGATGGCTGTGTAACTAC
CCTTGGAGAGAGGGGTGAGAAGAGGGGGCTACCCACTCCTGTGTCACTGCTTCTTGTGCC
ACCACTTCTTCCTGGCCTGACAGGGTAACCCTCAGGCCACACCTAGGCATCCACACTGCA
TTCACATCCTGCCCACTCACCTTTCTGGGTGGATGC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               57-376, - strand, RNAz p=0.999996
               

               
               457-574, - strand, RNAz p=0.941743

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               57-376, - strand, RNAz p=0.999996
               

               
               457-574, - strand, RNAz p=0.941743

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               257-372, AL520522 Homo sapiens NEUROBLASTOMA COT 10-NORMALIZED Homo sapiens 
(emb|AL520522.3|), blast E-value=8e-36, identity=92.24% 
               

               
               257-372, BX463228 Homo sapiens FETAL LIVER Homo sapiens cDNA clone 
(emb|BX463228.2|), blast E-value=8e-36, identity=92.24% 
               

               
               222-372, MR2-NN1111-310700-003-b05 NN1111 Homo sapiens cDNA, mRNA sequence 
(gb|BF364702.1|), blast E-value=5e-40, identity=89.4% 
               

               
               257-372, 17000600006477 GRN_PREHEP Homo sapiens cDNA 5', mRNA sequence 
(gb|CN309392.1|), blast E-value=8e-36, identity=92.24% 
               

               
               257-372, od31f01.y1 Human keratoconus cornea, unamplified, (od/oe) Homo 
(gb|CV573035.1|), blast E-value=8e-36, identity=92.24% 
               

               
               257-372, AGENCOURT_41387001 NIH_MGC_281 Homo sapiens cDNA clone 
(gb|CX757079.1|), blast E-value=8e-36, identity=92.24%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               257-372, AL520522 Homo sapiens NEUROBLASTOMA COT 10-NORMALIZED Homo sapiens 
(emb|AL520522.3|), blast E-value=8e-36, identity=92.24% 
               

               
               257-372, BX463228 Homo sapiens FETAL LIVER Homo sapiens cDNA clone 
(emb|BX463228.2|), blast E-value=8e-36, identity=92.24% 
               

               
               222-372, MR2-NN1111-310700-003-b05 NN1111 Homo sapiens cDNA, mRNA sequence 
(gb|BF364702.1|), blast E-value=5e-40, identity=89.4% 
               

               
               257-372, 17000600006477 GRN_PREHEP Homo sapiens cDNA 5', mRNA sequence 
(gb|CN309392.1|), blast E-value=8e-36, identity=92.24% 
               

               
               257-372, od31f01.y1 Human keratoconus cornea, unamplified, (od/oe) Homo 
(gb|CV573035.1|), blast E-value=8e-36, identity=92.24% 
               

               
               257-372, AGENCOURT_41387001 NIH_MGC_281 Homo sapiens cDNA clone 
(gb|CX757079.1|), blast E-value=8e-36, identity=92.24%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               18-793, gnl|bosTau2|chr11 (3299474-3300228)
               

               
               18-793, gnl|Hg17|chr2 (97732178-97731470)
               

               
               18-793, gnl|Mm7|chr1 (36941763-36941051)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-793, gnl|bosTau2|chr11 (3299474-3300228)
               

               
               18-793, gnl|Hg17|chr2 (97732178-97731470)
               

               
               18-793, gnl|Mm7|chr1 (36941763-36941051)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	57-376, - strand, RNAz p=0.999996
	457-574, - strand, RNAz p=0.941743

	257-372, AL520522 Homo sapiens NEUROBLASTOMA COT 10-NORMALIZED Homo sapiens (emb\|AL520522.3\|), blast E-value=8e-36, identity=92.24%
	257-372, BX463228 Homo sapiens FETAL LIVER Homo sapiens cDNA clone (emb\|BX463228.2\|), blast E-value=8e-36, identity=92.24%
	222-372, MR2-NN1111-310700-003-b05 NN1111 Homo sapiens cDNA, mRNA sequence (gb\|BF364702.1\|), blast E-value=5e-40, identity=89.4%
	257-372, 17000600006477 GRN_PREHEP Homo sapiens cDNA 5', mRNA sequence (gb\|CN309392.1\|), blast E-value=8e-36, identity=92.24%
	257-372, od31f01.y1 Human keratoconus cornea, unamplified, (od/oe) Homo (gb\|CV573035.1\|), blast E-value=8e-36, identity=92.24%
	257-372, AGENCOURT_41387001 NIH_MGC_281 Homo sapiens cDNA clone (gb\|CX757079.1\|), blast E-value=8e-36, identity=92.24%

	18-793, gnl\|bosTau2\|chr11 (3299474-3300228)
	18-793, gnl\|Hg17\|chr2 (97732178-97731470)
	18-793, gnl\|Mm7\|chr1 (36941763-36941051)