Ss1.1-rebs17c_i12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAAGCACATTCTACAGATTCTGAATTTCACTGGCCCTTTATTTCTACCTCCAGGCTGTT GGAAAATATTTTCTTTGAAACTTGCTGTTAAAGACATTGCCATAAACCTATTCACCCATG TATTTTTGACTACAAACATAGGTGCTATTTTTGCAATACCTCTACAGATATACTCGGCAC CAACCAAGGAAGGGAGTCTGGGTTTTGAAGTGCTAGCACATTGTGGCATGCATTATTTCA TGGGAAAGTCAAAAGCAGAAAATCCTAACTGGGAAGGGAGCCTTTCTCTGGATCGGTCTA CCTGGGATGTGGATTCCGAACTTGCAAATAAGTTGTATGAGAGATGGAAGCGATTAAAAC ACGGTGACATCTGCAAGAGGAATGTTTTGGGAATGACTCGGTTTGCCCACGCGAAGAAAT CCAAAGAGTCAGAACCCTTTGCTCTCTTCCTGCCTCGTTTGATCCCGGAGCCTGGCCTGG TGTTAAACTTCAGCGCAACCGCCCTCAGGAACAGCGTGGTGAAGTACTTGACGCTGAGAA ACCCATCCTCATGGCCCGTCTCCCTGCAGCTCCTGCCCATCTCCTTCTACCCGAAACCCG AGGCCGCTGTGCGCCTGCTTCACAAATGGTTTGGCACCGACATGCAAATGATTAATTTCA CAACTCGTGAATTTCAGCTCACCAAAGCTTGCCCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAAGCACATTCTACAGATTCTGAATTTCACTGGCCCTTTATTTCTACCTCCAGGCTGTT GGAAAATATTTTCTTTGAAACTTGCTGTTAAAGACATTGCCATAAACCTATTCACCCATG TATTTTTGACTACAAACATAGGTGCTATTTTTGCAATACCTCTACAGATATACTCGGCAC CAACCAAGGAAGGGAGTCTGGGTTTTGAAGTGCTAGCACATTGTGGCATGCATTATTTCA TGGGAAAGTCAAAAGCAGAAAATCCTAACTGGGAAGGGAGCCTTTCTCTGGATCGGTCTA CCTGGGATGTGGATTCCGAACTTGCAAATAAGTTGTATGAGAGATGGAAGCGATTAAAAC ACGGTGACATCTGCAAGAGGAATGTTTTGGGAATGACTCGGTTTGCCCACGCGAAGAAAT CCAAAGAGTCAGAACCCTTTGCTCTCTTCCTGCCTCGTTTGATCCCGGAGCCTGGCCTGG TGTTAAACTTCAGCGCAACCGCCCTCAGGAACAGCGTGGTGAAGTACTTGACGCTGAGAA ACCCATCCTCATGGCCCGTCTCCCTGCAGCTCCTGCCCATCTCCTTCTACCCGAAACCCG AGGCCGCTGTGCGCCTGCTTCACAAATGGTTTGGCACCGACATGCAAATGATTAATTTCA CAACTCGTGAATTTCAGCTCACCAAAGCTTGCCCTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 72-189, - strand, RNAz p=0.757635 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 72-189, - strand, RNAz p=0.757635 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 16-189, gnl|bosTau2|chr17 (3024550-3024377) | |
| 16-189, gnl|canFam2|chr15 (54403543-54403767) | |
| 16-189, gnl|dasNov1|scaffold_5163 (35957-35731) | |
| 16-189, gnl|galGal2|chr4 (20586957-20587189) | |
| 16-189, gnl|hg17|chr4 (154864939-154865166) | |
| 16-189, gnl|Hg17|chr4 (154864964-154865137) | |
| 16-189, gnl|loxAfr1|scaffold_43218 (6265-6038) | |
| 16-189, gnl|mm7|chr3 (84050826-84050600) | |
| 16-189, gnl|Mm7|chr3 (84050799-84050626) | |
| 16-189, gnl|monDom2|scaffold_9 (23901417-23901684) | |
| 16-189, gnl|oryCun1|scaffold_141050 (3454-3681) | |
| 16-189, gnl|panTro1|chr3_random (21172169-21172396) | |
| 16-189, gnl|rheMac2|chr5 (145792114-145792341) | |
| 16-189, gnl|rn3|chr2 (175655111-175654884) | |
| 373-522, gnl|bosTau2|chr17 (3020074-3019925) | |
| 373-522, gnl|canFam2|chr15 (54407949-54408127) | |
| 373-522, gnl|dasNov1|scaffold_5163 (31678-31497) | |
| 373-522, gnl|echTel1|scaffold_312071 (41957-42141) | |
| 373-522, gnl|galGal2|chr4 (20589818-20589984) | |
| 373-522, gnl|hg17|chr4 (154869784-154869961) | |
| 373-522, gnl|Hg17|chr4 (154869806-154869955) | |
| 373-522, gnl|loxAfr1|scaffold_43218 (730-553) | |
| 373-522, gnl|mm7|chr3 (84046116-84045920) | |
| 373-522, gnl|Mm7|chr3 (84046073-84045924) | |
| 373-522, gnl|monDom2|scaffold_9 (23904577-23904750) | |
| 373-522, gnl|oryCun1|scaffold_141050 (8351-8531) | |
| 373-522, gnl|rheMac2|chr5 (145796793-145796970) | |
| 373-522, gnl|rn3|chr2 (175651081-175650890) | |
| 373-522, gnl|xenTro1|scaffold_93 (1239331-1239151) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 16-189, gnl|bosTau2|chr17 (3024550-3024377) | |
| 16-189, gnl|canFam2|chr15 (54403543-54403767) | |
| 16-189, gnl|dasNov1|scaffold_5163 (35957-35731) | |
| 16-189, gnl|galGal2|chr4 (20586957-20587189) | |
| 16-189, gnl|hg17|chr4 (154864939-154865166) | |
| 16-189, gnl|Hg17|chr4 (154864964-154865137) | |
| 16-189, gnl|loxAfr1|scaffold_43218 (6265-6038) | |
| 16-189, gnl|mm7|chr3 (84050826-84050600) | |
| 16-189, gnl|Mm7|chr3 (84050799-84050626) | |
| 16-189, gnl|monDom2|scaffold_9 (23901417-23901684) | |
| 16-189, gnl|oryCun1|scaffold_141050 (3454-3681) | |
| 16-189, gnl|panTro1|chr3_random (21172169-21172396) | |
| 16-189, gnl|rheMac2|chr5 (145792114-145792341) | |
| 16-189, gnl|rn3|chr2 (175655111-175654884) | |
| 373-522, gnl|bosTau2|chr17 (3020074-3019925) | |
| 373-522, gnl|canFam2|chr15 (54407949-54408127) | |
| 373-522, gnl|dasNov1|scaffold_5163 (31678-31497) | |
| 373-522, gnl|echTel1|scaffold_312071 (41957-42141) | |
| 373-522, gnl|galGal2|chr4 (20589818-20589984) | |
| 373-522, gnl|hg17|chr4 (154869784-154869961) | |
| 373-522, gnl|Hg17|chr4 (154869806-154869955) | |
| 373-522, gnl|loxAfr1|scaffold_43218 (730-553) | |
| 373-522, gnl|mm7|chr3 (84046116-84045920) | |
| 373-522, gnl|Mm7|chr3 (84046073-84045924) | |
| 373-522, gnl|monDom2|scaffold_9 (23904577-23904750) | |
| 373-522, gnl|oryCun1|scaffold_141050 (8351-8531) | |
| 373-522, gnl|rheMac2|chr5 (145796793-145796970) | |
| 373-522, gnl|rn3|chr2 (175651081-175650890) | |
| 373-522, gnl|xenTro1|scaffold_93 (1239331-1239151) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) | |
| ebs (0.118301) |