Ss1.1-rebs17c_i16.5
|
TTCCAAGCCCCAACCTGTCAGATCCTAGCTCCAAAAACCACAGTCGAGAGAGCCCATGGG
AAGAGCAAGTGGGTCCTGACAACCTCAGAAGGGATCCTGGATCCCTTCACTACAGGGACT
GGATATTAAAACTGCACCCATGAGAGGCAGACCCTGACACCTCCAGGCACTGGAGCCCAA
CGCTCAGCCCCCAGTCGAGCTCCCCACTGGCCAATCACAGCATCCTGGATCCCATGCACC
CCCGTCCCAGACACAGACCAGAGCCCAGTTACCTCCCACCATGACACACACCCCAGAGTC
TAGGGAGCCTCCAGGAAGCCCAGGTCCTGGGCTCCCAGCTCCAGAAAACCCACGGGACTC
ATCCACTGTCGTGACATGACACAGATACCAGCCACAAGGGGAGGAGATGCCCCTCCCAGG
CCCTGCACAGACACTGAACTCTCCTCACCTTCCCCAGTACGACCTCAACTCTGCGCCTGA
GGGGAAACTTCTCCCTCAAATGCCCCCTTCCTAGCCCTCTGCTGTGTCTTCCATCCCCTC
CTCACCTTACAGGTGGCTAACAACCCGGAAAGCCTAGGTCCCTCTGGAGGATCCAGTGGT
TCTTTCTTTGGGGCTGGCAAGGAGGCAATCCCAGGCCGGGGACACATTAAGGGGACCCTC
CCACCGACTCACACCCCAGCACTGCCACCCCTTCCCCAGTCTTCAAAGTTGGAAGCCAGA
AGCAGCTTCCTTAAACCCAAGCATCCAAGGATGCAAAACCAACAAGTCCCAACCTCTCCC
CCCAGTTCACTCCAGGTCTATTTTTCTATCAGAGGAGCATCTGCCCATCCGCCCGACTAA
CCCAAGCCCCCAGCACCCCCACCCTGTACCTTCTGCACTTTACAGTTGGATGCTGAGCTT
AGGATCACTGGGGGGCCCCTCTCTCCACTACTTCCATGCCCTTGGGGAACCCCATTAAGG
GACTTTGAAAAAGGAACCAGGCTGTTGGGGGGAGGCGGGAGGCCCCCTCTCCGAATGCTT
CCACCTCCCCCATGCCCCACCTCCCTGCCTGTGTGTGTTATTTCAAAGGAAAAGAACAAA
GGAATACATTTT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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TTCCAAGCCCCAACCTGTCAGATCCTAGCTCCAAAAACCACAGTCGAGAGAGCCCATGGG
AAGAGCAAGTGGGTCCTGACAACCTCAGAAGGGATCCTGGATCCCTTCACTACAGGGACT
GGATATTAAAACTGCACCCATGAGAGGCAGACCCTGACACCTCCAGGCACTGGAGCCCAA
CGCTCAGCCCCCAGTCGAGCTCCCCACTGGCCAATCACAGCATCCTGGATCCCATGCACC
CCCGTCCCAGACACAGACCAGAGCCCAGTTACCTCCCACCATGACACACACCCCAGAGTC
TAGGGAGCCTCCAGGAAGCCCAGGTCCTGGGCTCCCAGCTCCAGAAAACCCACGGGACTC
ATCCACTGTCGTGACATGACACAGATACCAGCCACAAGGGGAGGAGATGCCCCTCCCAGG
CCCTGCACAGACACTGAACTCTCCTCACCTTCCCCAGTACGACCTCAACTCTGCGCCTGA
GGGGAAACTTCTCCCTCAAATGCCCCCTTCCTAGCCCTCTGCTGTGTCTTCCATCCCCTC
CTCACCTTACAGGTGGCTAACAACCCGGAAAGCCTAGGTCCCTCTGGAGGATCCAGTGGT
TCTTTCTTTGGGGCTGGCAAGGAGGCAATCCCAGGCCGGGGACACATTAAGGGGACCCTC
CCACCGACTCACACCCCAGCACTGCCACCCCTTCCCCAGTCTTCAAAGTTGGAAGCCAGA
AGCAGCTTCCTTAAACCCAAGCATCCAAGGATGCAAAACCAACAAGTCCCAACCTCTCCC
CCCAGTTCACTCCAGGTCTATTTTTCTATCAGAGGAGCATCTGCCCATCCGCCCGACTAA
CCCAAGCCCCCAGCACCCCCACCCTGTACCTTCTGCACTTTACAGTTGGATGCTGAGCTT
AGGATCACTGGGGGGCCCCTCTCTCCACTACTTCCATGCCCTTGGGGAACCCCATTAAGG
GACTTTGAAAAAGGAACCAGGCTGTTGGGGGGAGGCGGGAGGCCCCCTCTCCGAATGCTT
CCACCTCCCCCATGCCCCACCTCCCTGCCTGTGTGTGTTATTTCAAAGGAAAAGAACAAA
GGAATACATTTT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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1003-1127, - strand, RNAmicro p=0.993471 |
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1001-1099, + strand, RNAmicro p=0.979211 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
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1003-1127, - strand, RNAmicro p=0.993471 |
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1001-1099, + strand, RNAmicro p=0.979211 |
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856-977, 155458 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BE667687.1|),
blast E-value=4e-21, identity=86.99% |
|
856-977, 201198 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BE750053.1|),
blast E-value=4e-21, identity=86.99% |
|
839-1032, 967219 MARC 3BOV Bos taurus cDNA 3', mRNA sequence (gb|CK776076.1|),
blast E-value=0, identity=100% |
|
856-977, BovGen_24811 normal cattle brain Bos taurus cDNA clone
(gb|CO896486.1|), blast E-value=4e-21, identity=86.99% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
856-977, 155458 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BE667687.1|),
blast E-value=4e-21, identity=86.99% |
|
856-977, 201198 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BE750053.1|),
blast E-value=4e-21, identity=86.99% |
|
839-1032, 967219 MARC 3BOV Bos taurus cDNA 3', mRNA sequence (gb|CK776076.1|),
blast E-value=0, identity=100% |
|
856-977, BovGen_24811 normal cattle brain Bos taurus cDNA clone
(gb|CO896486.1|), blast E-value=4e-21, identity=86.99% |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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mcp (0.341297) |
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nep (0.183925) |
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fhi (0.169578) |
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ebs (0.118301) |
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ecc (0.115035) |
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mcp (0.341297) |
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nep (0.183925) |
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fhi (0.169578) |
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ebs (0.118301) |
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ecc (0.115035) |