Non-Coding RNA Search

Ss1.1-rebs17c_i7.5

Sequence:


               
               TCCCTGCCGGACACCTACTATCTGAAGACCGTCACGTCGGCCTCCAACAACGAGACCTAC
TGCCGGTCCTTCTACCCCGAGCACAGCGTCAAGGAGTGGCTCATCAGCATGGAGCTGGTC
TCCGTGGTCCTGGGCTTCGCCATCCCCTTCTCGGTCATCGCCGTCTTCTACTGCCTGCTG
GCGCGGGCCGTCTCCTCCTCCAGCGACCCGGAGAAGCACAGCAGCCGCAAGATCATCTTC
TCCTACGTGGTGGTCTTCCTCGTGTGCTGGCTGCCCTACCACGTCGTGGTGCTGCTGGAC
ATCTTCTCCATCCTGCACTACCTGCCCTTCAGCTGCCAGCTGGAGAACTTCCTGTTCACG
GCGCTGCACGTCACGCAGTGCCTGTCCCTGGTGCACTGCTGCGTCAACCCCGTGCTCTAC
AGCTTCATCCACCGCAGCTACAGGTACGAGCTGATGAAAGCCTTCATCTTCAAGTACTCG
GCCAAAACGGGCCTCACCAAGCTCATCGATGCCTCCCGCGCGTCCGAGACCGAGTACTCT
GCTCTGGAGCAGACCACCAAGTGATGCGCCCCGCGGAGCCCCCCCCCCCCGGCATCTGGG
CGCTTGGTCCCGGCGAGGCACCGGGCTGCGTGGTTCCCAGAGCGGAGCAAAGGGGCTTCG
GGCTTGATGCCCCGCTCGTGGGAAGAGGGGGCCGCGTCTCCCCGTGGCTCCTTTCCGTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCTGCCGGACACCTACTATCTGAAGACCGTCACGTCGGCCTCCAACAACGAGACCTAC
TGCCGGTCCTTCTACCCCGAGCACAGCGTCAAGGAGTGGCTCATCAGCATGGAGCTGGTC
TCCGTGGTCCTGGGCTTCGCCATCCCCTTCTCGGTCATCGCCGTCTTCTACTGCCTGCTG
GCGCGGGCCGTCTCCTCCTCCAGCGACCCGGAGAAGCACAGCAGCCGCAAGATCATCTTC
TCCTACGTGGTGGTCTTCCTCGTGTGCTGGCTGCCCTACCACGTCGTGGTGCTGCTGGAC
ATCTTCTCCATCCTGCACTACCTGCCCTTCAGCTGCCAGCTGGAGAACTTCCTGTTCACG
GCGCTGCACGTCACGCAGTGCCTGTCCCTGGTGCACTGCTGCGTCAACCCCGTGCTCTAC
AGCTTCATCCACCGCAGCTACAGGTACGAGCTGATGAAAGCCTTCATCTTCAAGTACTCG
GCCAAAACGGGCCTCACCAAGCTCATCGATGCCTCCCGCGCGTCCGAGACCGAGTACTCT
GCTCTGGAGCAGACCACCAAGTGATGCGCCCCGCGGAGCCCCCCCCCCCCGGCATCTGGG
CGCTTGGTCCCGGCGAGGCACCGGGCTGCGTGGTTCCCAGAGCGGAGCAAAGGGGCTTCG
GGCTTGATGCCCCGCTCGTGGGAAGAGGGGGCCGCGTCTCCCCGTGGCTCCTTTCCGTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50979088|ref|NP_001003281.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50979088|ref|NP_001003281.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               160-399, - strand, RNAz p=0.962877
               

               
               440-559, - strand, RNAz p=0.637088

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-399, - strand, RNAz p=0.962877
               

               
               440-559, - strand, RNAz p=0.637088

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-715, gnl|bosTau2|chr18 (39152221-39151505)
               

               
               1-715, gnl|Hg17|chr2 (237271634-237272347)
               

               
               1-715, gnl|Mm7|chr1 (90119123-90119836)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-715, gnl|bosTau2|chr18 (39152221-39151505)
               

               
               1-715, gnl|Hg17|chr2 (237271634-237272347)
               

               
               1-715, gnl|Mm7|chr1 (90119123-90119836)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)

	160-399, - strand, RNAz p=0.962877
	440-559, - strand, RNAz p=0.637088

	1-715, gnl\|bosTau2\|chr18 (39152221-39151505)
	1-715, gnl\|Hg17\|chr2 (237271634-237272347)
	1-715, gnl\|Mm7\|chr1 (90119123-90119836)