Ss1.1-rebs17c_k21.5
|
GGGCACTGGGCCTGCCTTACCAAGGACCAAAGGGGGTCTGCCAAGGCCCCTCCCGCAAGA
GGAGCACCGGCCTCACCCCTCAGGCTGGGCTTCCAGACCCCTGCCTCCTTTCTCCTCTCT
GAGCTGTGATCCAGCTGGGCTCTTTCCATGGGCCTCCTCCCACCCTCTCTCACTGCCCCC
ACACCGCCAGTCTCAGGGGTCTCAGTACCCCACCAGTCTCAGGCTCAGCTGCCAGTATCC
TGGCTTGCCAAGGGGAGAAGGGGCTGATGGGTGTCCAGGCTGGGTGGTAGATGTCCACAG
ACAGGGACCCACCAGGCTTGGGCGTTTCTTCCTTTCCGGCGCCCTGTTCCTCAGGGCACT
GGAAGGAGGGAGAGGCCAGCAGCTCGCCCCCTCACACAGACTGTGGGACGGGGCTGTGGA
GCCCCCAGAGGAGCCCGCTGTAGGCTGGAGACCCCTCCTCCTGGGCTTAGTCCTGAGGGC
AGAGACGCCTCCTCCTCCTTGTCCTTCCCAAAGTAAGCAGGAGGCGAGGCTGCTGTGGGA
CATGGTACTGTAGAGCCGGCTCTGTCCCTCTGCCTCCCTGCAGCCCTGAGCAAGCGGGTC
TGCCACCCAGAACCCCTGCGGCCCCTGGGGGAGGGGCTTCTCATGGGCTGGCCCCCAGCG
CGAGCCCACTCTCCTCCCCATCCTCAGAACCATCGGAGAGCCAGCCGAGGGGGGCGGGGA
GGGGGAGGGGGTCTGCCCCCATACGGTTTTTTCTGTAAATACTCTGCACTGATTAAACTG |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGGCACTGGGCCTGCCTTACCAAGGACCAAAGGGGGTCTGCCAAGGCCCCTCCCGCAAGA
GGAGCACCGGCCTCACCCCTCAGGCTGGGCTTCCAGACCCCTGCCTCCTTTCTCCTCTCT
GAGCTGTGATCCAGCTGGGCTCTTTCCATGGGCCTCCTCCCACCCTCTCTCACTGCCCCC
ACACCGCCAGTCTCAGGGGTCTCAGTACCCCACCAGTCTCAGGCTCAGCTGCCAGTATCC
TGGCTTGCCAAGGGGAGAAGGGGCTGATGGGTGTCCAGGCTGGGTGGTAGATGTCCACAG
ACAGGGACCCACCAGGCTTGGGCGTTTCTTCCTTTCCGGCGCCCTGTTCCTCAGGGCACT
GGAAGGAGGGAGAGGCCAGCAGCTCGCCCCCTCACACAGACTGTGGGACGGGGCTGTGGA
GCCCCCAGAGGAGCCCGCTGTAGGCTGGAGACCCCTCCTCCTGGGCTTAGTCCTGAGGGC
AGAGACGCCTCCTCCTCCTTGTCCTTCCCAAAGTAAGCAGGAGGCGAGGCTGCTGTGGGA
CATGGTACTGTAGAGCCGGCTCTGTCCCTCTGCCTCCCTGCAGCCCTGAGCAAGCGGGTC
TGCCACCCAGAACCCCTGCGGCCCCTGGGGGAGGGGCTTCTCATGGGCTGGCCCCCAGCG
CGAGCCCACTCTCCTCCCCATCCTCAGAACCATCGGAGAGCCAGCCGAGGGGGGCGGGGA
GGGGGAGGGGGTCTGCCCCCATACGGTTTTTTCTGTAAATACTCTGCACTGATTAAACTG |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
331-398, + strand, RNAmicro p=0.999477 |
|
321-428, - strand, RNAmicro p=0.906572 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
331-398, + strand, RNAmicro p=0.999477 |
|
321-428, - strand, RNAmicro p=0.906572 |
|
6-59, 275473 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF652031.1|), blast
E-value=8e-18, identity=98.15% |
|
6-59, 495080 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BM030624.1|), blast
E-value=8e-18, identity=98.15% |
|
6-59, BovGen_03859 normal cattle brain Bos taurus cDNA clone (gb|CO875534.1|),
blast E-value=8e-18, identity=98.15% |
|
6-59, LB03012.CR_O22 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|DV928233.1|),
blast E-value=8e-18, identity=98.15% |
|
6-59, 000924BEMN022910HT BEMN Bos taurus cDNA, mRNA sequence (gb|DY048441.1|),
blast E-value=8e-18, identity=98.15% |
|
6-59, 000924BEMN021041HT BEMN Bos taurus cDNA, mRNA sequence (gb|DY200519.1|),
blast E-value=8e-18, identity=98.15% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
6-59, 275473 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF652031.1|), blast
E-value=8e-18, identity=98.15% |
|
6-59, 495080 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BM030624.1|), blast
E-value=8e-18, identity=98.15% |
|
6-59, BovGen_03859 normal cattle brain Bos taurus cDNA clone (gb|CO875534.1|),
blast E-value=8e-18, identity=98.15% |
|
6-59, LB03012.CR_O22 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|DV928233.1|),
blast E-value=8e-18, identity=98.15% |
|
6-59, 000924BEMN022910HT BEMN Bos taurus cDNA, mRNA sequence (gb|DY048441.1|),
blast E-value=8e-18, identity=98.15% |
|
6-59, 000924BEMN021041HT BEMN Bos taurus cDNA, mRNA sequence (gb|DY200519.1|),
blast E-value=8e-18, identity=98.15% |
Human gene identifier and UTR site,
human gene reading direction
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
ebs (0.236602) |
|
jej (0.197844) |
|
nmm (0.132802) |
|
eep (0.122564) |
|
jca (0.11396) |
|
ebs (0.236602) |
|
jej (0.197844) |
|
nmm (0.132802) |
|
eep (0.122564) |
|
jca (0.11396) |