Ss1.1-rebs17c_k23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTTTCAGAGCACATGCACGCCTTGCTCGCTGCGTTTTGTTGCTCCGCTGTACCTGCTGG GAATTCACCTTGTCATTGCCTGGGGTATCTTCCACCCGCCACAAAATCAGAAAAGTTGTG TTCTTTAACACCAAAGAGGACTGGCTTTCTGGGGCTGATTCTGTGACATTGGAATTCAAA GAAGAGACGCTCCAGAGAAATACGCTATGACGAAAAGCAATGGAGAAGAGGCCAGGATGG GGGGCAGGATGGAGAGATTCCAGCAAGGAGTCCGTAAACGCACACTCTTGGCTAAGAAGA AAGTGCAGAACATCACAAAGGAGGATGTTAAAAGTTACCTATTTCGGAATGCTTTTGTGC TGCTCACTGTCACCGCCGTCATTGTGGGTACAATCCTTGGGTTTGCCCTGCGACCATACA AAATGAGCTACCGGGAAGTCAAGTACTTCTCCTTTCCTGGGGAGCTTCTGATGAGGATGC TACAGATGCTGGTGTTACCACTCATCATCTCCAGTCTTGTCACAGGAATGGCGGCCCTAG ATAGTAAGGCGTCAGGGAAGATGGGGATGCGAGCCGTAGTCTATTACATGACTACCACCG TCATTGCCGTGGTGATTGGCATAATCATTGTCATCATCATCCATCCTGGGAAGGGCACAA AGGAAAACATGCACAGAGAAGGCAAAATTGTACAAGTGACAGCTGCAGACGCCTTCCTGG ACTTGATCAGGAATATGTTCCCTCCAAATCTGGTGGAAGCCTGCTTTAAACAGTTTAAAA CCAACTATGAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTTTCAGAGCACATGCACGCCTTGCTCGCTGCGTTTTGTTGCTCCGCTGTACCTGCTGG GAATTCACCTTGTCATTGCCTGGGGTATCTTCCACCCGCCACAAAATCAGAAAAGTTGTG TTCTTTAACACCAAAGAGGACTGGCTTTCTGGGGCTGATTCTGTGACATTGGAATTCAAA GAAGAGACGCTCCAGAGAAATACGCTATGACGAAAAGCAATGGAGAAGAGGCCAGGATGG GGGGCAGGATGGAGAGATTCCAGCAAGGAGTCCGTAAACGCACACTCTTGGCTAAGAAGA AAGTGCAGAACATCACAAAGGAGGATGTTAAAAGTTACCTATTTCGGAATGCTTTTGTGC TGCTCACTGTCACCGCCGTCATTGTGGGTACAATCCTTGGGTTTGCCCTGCGACCATACA AAATGAGCTACCGGGAAGTCAAGTACTTCTCCTTTCCTGGGGAGCTTCTGATGAGGATGC TACAGATGCTGGTGTTACCACTCATCATCTCCAGTCTTGTCACAGGAATGGCGGCCCTAG ATAGTAAGGCGTCAGGGAAGATGGGGATGCGAGCCGTAGTCTATTACATGACTACCACCG TCATTGCCGTGGTGATTGGCATAATCATTGTCATCATCATCCATCCTGGGAAGGGCACAA AGGAAAACATGCACAGAGAAGGCAAAATTGTACAAGTGACAGCTGCAGACGCCTTCCTGG ACTTGATCAGGAATATGTTCCCTCCAAATCTGGTGGAAGCCTGCTTTAAACAGTTTAAAA CCAACTATGAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 524-642, + strand, RNAz p=0.583809 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 524-642, + strand, RNAz p=0.583809 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 114-390, gnl|bosTau2|chr20 (24298753-24298477) | |
| 114-390, gnl|Hg17|chr5 (36644186-36644466) | |
| 114-390, gnl|Mm7|chr15 (8538330-8538048) | |
| 524-731, gnl|bosTau2|chr20 (24234884-24234677) | |
| 524-731, gnl|canFam2|chr20 (50139414-50139233) | |
| 524-731, gnl|canFam2|chr4 (75150551-75150337) | |
| 524-731, gnl|danRer3|chr10 (34040144-34039934) | |
| 524-731, gnl|danRer3|chr11 (3544412-3544596) | |
| 524-731, gnl|dasNov1|scaffold_12386 (2045-1848) | |
| 524-731, gnl|dasNov1|scaffold_148809 (188-6) | |
| 524-731, gnl|echTel1|scaffold_210020 (3576-3395) | |
| 524-731, gnl|echTel1|scaffold_295971 (132877-133091) | |
| 524-731, gnl|fr1|chrUn (301216051-301216235) | |
| 524-731, gnl|fr1|chrUn (250229767-250229980) | |
| 524-731, gnl|galGal2|chr28 (653093-653274) | |
| 524-731, gnl|galGal2|chrZ_random (10223942-10224156) | |
| 524-731, gnl|hg17|chr19 (14940109-14940294) | |
| 524-731, gnl|hg17|chr5 (36706885-36707099) | |
| 524-731, gnl|Hg17|chr5 (36706886-36707093) | |
| 524-731, gnl|loxAfr1|scaffold_1623 (57747-57929) | |
| 524-731, gnl|loxAfr1|scaffold_1623 (57959-57748) | |
| 524-731, gnl|mm7|chr10 (78445977-78445796) | |
| 524-731, gnl|mm7|chr15 (8480547-8480333) | |
| 524-731, gnl|Mm7|chr15 (8480544-8480337) | |
| 524-731, gnl|monDom2|scaffold_100 (500722-500902) | |
| 524-731, gnl|monDom2|scaffold_20 (35732737-35732523) | |
| 524-731, gnl|oryCun1|scaffold_174334 (22874-23055) | |
| 524-731, gnl|oryCun1|scaffold_177141 (41057-41271) | |
| 524-731, gnl|panTro1|chr20 (15582744-15582924) | |
| 524-731, gnl|panTro1|chr4 (80117698-80117484) | |
| 524-731, gnl|rheMac2|chr19 (14547747-14547932) | |
| 524-731, gnl|rheMac2|chr6 (36483588-36483802) | |
| 524-731, gnl|rn3|chr2 (58214338-58214124) | |
| 524-731, gnl|rn3|chr7 (12407897-12408078) | |
| 524-731, gnl|tetNig1|chrUn_random (112291832-112291651) | |
| 524-731, gnl|tetNig1|chrUn_random (112291622-112291835) | |
| 524-731, gnl|xenTro1|scaffold_1301 (72417-72237) | |
| 524-731, gnl|xenTro1|scaffold_1301 (72207-72418) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 114-390, gnl|bosTau2|chr20 (24298753-24298477) | |
| 114-390, gnl|Hg17|chr5 (36644186-36644466) | |
| 114-390, gnl|Mm7|chr15 (8538330-8538048) | |
| 524-731, gnl|bosTau2|chr20 (24234884-24234677) | |
| 524-731, gnl|canFam2|chr20 (50139414-50139233) | |
| 524-731, gnl|canFam2|chr4 (75150551-75150337) | |
| 524-731, gnl|danRer3|chr10 (34040144-34039934) | |
| 524-731, gnl|danRer3|chr11 (3544412-3544596) | |
| 524-731, gnl|dasNov1|scaffold_12386 (2045-1848) | |
| 524-731, gnl|dasNov1|scaffold_148809 (188-6) | |
| 524-731, gnl|echTel1|scaffold_210020 (3576-3395) | |
| 524-731, gnl|echTel1|scaffold_295971 (132877-133091) | |
| 524-731, gnl|fr1|chrUn (301216051-301216235) | |
| 524-731, gnl|fr1|chrUn (250229767-250229980) | |
| 524-731, gnl|galGal2|chr28 (653093-653274) | |
| 524-731, gnl|galGal2|chrZ_random (10223942-10224156) | |
| 524-731, gnl|hg17|chr19 (14940109-14940294) | |
| 524-731, gnl|hg17|chr5 (36706885-36707099) | |
| 524-731, gnl|Hg17|chr5 (36706886-36707093) | |
| 524-731, gnl|loxAfr1|scaffold_1623 (57747-57929) | |
| 524-731, gnl|loxAfr1|scaffold_1623 (57959-57748) | |
| 524-731, gnl|mm7|chr10 (78445977-78445796) | |
| 524-731, gnl|mm7|chr15 (8480547-8480333) | |
| 524-731, gnl|Mm7|chr15 (8480544-8480337) | |
| 524-731, gnl|monDom2|scaffold_100 (500722-500902) | |
| 524-731, gnl|monDom2|scaffold_20 (35732737-35732523) | |
| 524-731, gnl|oryCun1|scaffold_174334 (22874-23055) | |
| 524-731, gnl|oryCun1|scaffold_177141 (41057-41271) | |
| 524-731, gnl|panTro1|chr20 (15582744-15582924) | |
| 524-731, gnl|panTro1|chr4 (80117698-80117484) | |
| 524-731, gnl|rheMac2|chr19 (14547747-14547932) | |
| 524-731, gnl|rheMac2|chr6 (36483588-36483802) | |
| 524-731, gnl|rn3|chr2 (58214338-58214124) | |
| 524-731, gnl|rn3|chr7 (12407897-12408078) | |
| 524-731, gnl|tetNig1|chrUn_random (112291832-112291651) | |
| 524-731, gnl|tetNig1|chrUn_random (112291622-112291835) | |
| 524-731, gnl|xenTro1|scaffold_1301 (72417-72237) | |
| 524-731, gnl|xenTro1|scaffold_1301 (72207-72418) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.118301) | |
| ecc (0.115035) |