Non-Coding RNA Search

Ss1.1-rebs17c_p21.5

Sequence:


               
               CGCAGCCCGCCGCCCGCCTTCCCGAGGACGGTGGAGCCGGTGTGCGTGCGAGCGGGAGGG
CGCGAGCCGGGGTCGAGGAGGAGGAGGAGGAGAGCGCGGGCTGGCGCTCGCCCGGGCGCT
GCCTGCGAGGCCCGAGTCGCACTTCCTGTGCGAGCGGCGGCCCGGCCCTAACCGCCACCC
CCTCCCCCTGTCTCCCTCTCTGAACCCGCCCATCGGGGGTAGGACACTCAGCCGTCACCG
CTTGCTCTGCTGGCCGCTACCTGCAGCAAGATAGGGCCGCCATCGCCCGGCGACGACGAG
GAGGAGGCGGCAGCCGCAGCCGGGGCCCCCGCCGCCGCCGCAGCCGCCGCCGGAGCGACA
GGTGATTGGGCTTCTACACAGTTAGGAGGAGCACCAAACCGATGGGAGGTTTGGTCAGCC
ACACCTACAACTATAAAAGATGAAGCCGGTAATCTAGTACAGATTCCAAGTGCTGCTACT
TCCAGTGGGCAGTATGTCCTTCCCCTTCAGAATTTGCAGAATCAGCAAATATTTTCAGTT
GCACCAGGATCAGATTCATCAAATGGTACAGTGTCCAATGTTCAATATCAAGTAATACCA
CAGATTCAGTCATCAGATGGTCAGCAGGTTCAGATTGGTTTCACAGGCTCTTCAGATAAT
GGGGGTATAAATCAAGAAAGTGGTCAAATTCAGATCATTCCTGGCTCTAATCAAACCTTG
CTTGCCTCTGGAACACCTCCTGCTAATATCCAGAATCTCATACCACAGACTGGTCAAGTC
CAGGTTCAGGGAGTTGCAATTGGTGGTTCATCTTTTCCTGGCCAAACCCAAGTAGTTGCT
AATGTGCCTCTTGGTCTTCCGGGAAATATTACCTTTGTACCAATCAATAGTGTTGATCTA
GATTCTTTGGGACTTTCGGGCAGTTCTCAGACAATGACTGCAGGCATTAATGCTGATGGA
CATTTGATAAACACAGGACAAGCTATGGATAGTTCAGACAATTCAGAAAGGACTGGTGAG
CGGGTTTCTCCTGATATTAATGAAACTAATACTGATACAGATTTATTTGTGCCAACGTCC
TCTTCATCACAGTTGCCTGTTACTATAGATAGTACAGGTATATTACAACAAAATACAAAT
AGCTTGACTACTACTAGTGGGCAAGTCCATTCTTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCAGCCCGCCGCCCGCCTTCCCGAGGACGGTGGAGCCGGTGTGCGTGCGAGCGGGAGGG
CGCGAGCCGGGGTCGAGGAGGAGGAGGAGGAGAGCGCGGGCTGGCGCTCGCCCGGGCGCT
GCCTGCGAGGCCCGAGTCGCACTTCCTGTGCGAGCGGCGGCCCGGCCCTAACCGCCACCC
CCTCCCCCTGTCTCCCTCTCTGAACCCGCCCATCGGGGGTAGGACACTCAGCCGTCACCG
CTTGCTCTGCTGGCCGCTACCTGCAGCAAGATAGGGCCGCCATCGCCCGGCGACGACGAG
GAGGAGGCGGCAGCCGCAGCCGGGGCCCCCGCCGCCGCCGCAGCCGCCGCCGGAGCGACA
GGTGATTGGGCTTCTACACAGTTAGGAGGAGCACCAAACCGATGGGAGGTTTGGTCAGCC
ACACCTACAACTATAAAAGATGAAGCCGGTAATCTAGTACAGATTCCAAGTGCTGCTACT
TCCAGTGGGCAGTATGTCCTTCCCCTTCAGAATTTGCAGAATCAGCAAATATTTTCAGTT
GCACCAGGATCAGATTCATCAAATGGTACAGTGTCCAATGTTCAATATCAAGTAATACCA
CAGATTCAGTCATCAGATGGTCAGCAGGTTCAGATTGGTTTCACAGGCTCTTCAGATAAT
GGGGGTATAAATCAAGAAAGTGGTCAAATTCAGATCATTCCTGGCTCTAATCAAACCTTG
CTTGCCTCTGGAACACCTCCTGCTAATATCCAGAATCTCATACCACAGACTGGTCAAGTC
CAGGTTCAGGGAGTTGCAATTGGTGGTTCATCTTTTCCTGGCCAAACCCAAGTAGTTGCT
AATGTGCCTCTTGGTCTTCCGGGAAATATTACCTTTGTACCAATCAATAGTGTTGATCTA
GATTCTTTGGGACTTTCGGGCAGTTCTCAGACAATGACTGCAGGCATTAATGCTGATGGA
CATTTGATAAACACAGGACAAGCTATGGATAGTTCAGACAATTCAGAAAGGACTGGTGAG
CGGGTTTCTCCTGATATTAATGAAACTAATACTGATACAGATTTATTTGTGCCAACGTCC
TCTTCATCACAGTTGCCTGTTACTATAGATAGTACAGGTATATTACAACAAAATACAAAT
AGCTTGACTACTACTAGTGGGCAAGTCCATTCTTCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61878365|ref|XP_602807.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61878365|ref|XP_602807.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               757-916, + strand, RNAz p=0.553906

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               757-916, + strand, RNAz p=0.553906

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AY441957, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AY441957, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-278, gnl|bosTau2|chr2 (13955929-13955652)
               

               
               1-278, gnl|Hg17|chr2 (174654359-174654063)
               

               
               1-278, gnl|Mm7|chr2 (72822941-72822690)
               


               
               357-1176, gnl|bosTau2|chr2 (13948049-13947230)
               

               
               357-1176, gnl|Hg17|chr2 (174646468-174645649)
               

               
               357-1176, gnl|Mm7|chr2 (72815231-72814412)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-278, gnl|bosTau2|chr2 (13955929-13955652)
               

               
               1-278, gnl|Hg17|chr2 (174654359-174654063)
               

               
               1-278, gnl|Mm7|chr2 (72822941-72822690)
               


               
               357-1176, gnl|bosTau2|chr2 (13948049-13947230)
               

               
               357-1176, gnl|Hg17|chr2 (174646468-174645649)
               

               
               357-1176, gnl|Mm7|chr2 (72815231-72814412)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nep (0.183925)
               

               
               liv (0.146284)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               liv (0.146284)
               

               
               ebs (0.118301)

	1-278, gnl\|bosTau2\|chr2 (13955929-13955652)
	1-278, gnl\|Hg17\|chr2 (174654359-174654063)
	1-278, gnl\|Mm7\|chr2 (72822941-72822690)

	357-1176, gnl\|bosTau2\|chr2 (13948049-13947230)
	357-1176, gnl\|Hg17\|chr2 (174646468-174645649)
	357-1176, gnl\|Mm7\|chr2 (72815231-72814412)