Non-Coding RNA Search

Ss1.1-rebs18c_h17.5

Sequence:


               
               GACCCTTCATTGGCTTGTTCATCAATACCTGCGGGTGCCGCCGGACAGCAATCATCGGAG
GGCTGCTGAACTCGCTGGGCTGGGTGTTGAGTGCTTATGCGGCAAACGTGCATTATCTCT
TTATTACCTTCGGACTCGCAGCTGGCTTTGGCAGCGGGATGGCCTACCTGCCGGCCGTGG
TCATGGTGGGCAGGTACTTCCAGAAGAGGCGCGCCCTCGCCCAGGGCCTCAGCACCACGG
GGACTGGGTTTGGCACATTTCTCATGACGGTTCTGCTCAAGTACCTGTGCGCGGAGTACG
GGTGGCGGAATGCCATGTTCATCCAAGGCGCCGTGTCCCTGAACCTGTGTGTCTGCGGGG
CGCTCATGAGACCTCTCTCTCCTGGGATGGATGGAGACGTCCCAGGAGGGAAAGAGCCAC
ACGTGATCCCTGCTCACTCCACCGAATCGATTAGGTCCAGCGGACAACCAGGCGGAACTG
AGGAAAAGGAGGGTGGCCCCGGCACCGACGACTCCCTCGGGGACGTGCCAGTCCCGGAGA
AGGCCGCGCACCGAAAGGACATGTGCGCCTTTCGGGTTCTGAAGATGATGAGCCAGCTGA
CCGTGAAAATCAGGAAGGGCTTCCAGGATTGGTACTCGGGCTATTTTGGAACAGCCTCGC
TCTTTACTAATCGGATGTTTGTCGCCTTTGTCTTCTGGGCTCTGTTTGCATACAGCAGCT
TTGTCATCCCTTTCATTCACCTCCCAGAGATAGTCAATTGGTACAATTTATCCGAAGAAA
ACGATGTTTTCCCTCTGACGTCGATTATAGCAATAGTTCACATCTTCGGAAAAGTGATCC
TGGGCATTGTGGCCGACCTACCTTGCATCAGCGTCTGGAATGTCTTCCTCATGGCCAACT
TCACCCTGGTCCTTTGTATTTTTATTCTGCCCTCGATGCACACGTACGCCAGCCTGGCGG
TCATCTGTGCGCTGATAGGATTTTCCAGCGGTTATTTCTCCCTGATGCCCGTGGTGACTG
AAGACTTGGTGGGGATCGAGCACCTGGCCAACGCCTACGGCATCATCATCTGTGCTAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCCTTCATTGGCTTGTTCATCAATACCTGCGGGTGCCGCCGGACAGCAATCATCGGAG
GGCTGCTGAACTCGCTGGGCTGGGTGTTGAGTGCTTATGCGGCAAACGTGCATTATCTCT
TTATTACCTTCGGACTCGCAGCTGGCTTTGGCAGCGGGATGGCCTACCTGCCGGCCGTGG
TCATGGTGGGCAGGTACTTCCAGAAGAGGCGCGCCCTCGCCCAGGGCCTCAGCACCACGG
GGACTGGGTTTGGCACATTTCTCATGACGGTTCTGCTCAAGTACCTGTGCGCGGAGTACG
GGTGGCGGAATGCCATGTTCATCCAAGGCGCCGTGTCCCTGAACCTGTGTGTCTGCGGGG
CGCTCATGAGACCTCTCTCTCCTGGGATGGATGGAGACGTCCCAGGAGGGAAAGAGCCAC
ACGTGATCCCTGCTCACTCCACCGAATCGATTAGGTCCAGCGGACAACCAGGCGGAACTG
AGGAAAAGGAGGGTGGCCCCGGCACCGACGACTCCCTCGGGGACGTGCCAGTCCCGGAGA
AGGCCGCGCACCGAAAGGACATGTGCGCCTTTCGGGTTCTGAAGATGATGAGCCAGCTGA
CCGTGAAAATCAGGAAGGGCTTCCAGGATTGGTACTCGGGCTATTTTGGAACAGCCTCGC
TCTTTACTAATCGGATGTTTGTCGCCTTTGTCTTCTGGGCTCTGTTTGCATACAGCAGCT
TTGTCATCCCTTTCATTCACCTCCCAGAGATAGTCAATTGGTACAATTTATCCGAAGAAA
ACGATGTTTTCCCTCTGACGTCGATTATAGCAATAGTTCACATCTTCGGAAAAGTGATCC
TGGGCATTGTGGCCGACCTACCTTGCATCAGCGTCTGGAATGTCTTCCTCATGGCCAACT
TCACCCTGGTCCTTTGTATTTTTATTCTGCCCTCGATGCACACGTACGCCAGCCTGGCGG
TCATCTGTGCGCTGATAGGATTTTCCAGCGGTTATTTCTCCCTGATGCCCGTGGTGACTG
AAGACTTGGTGGGGATCGAGCACCTGGCCAACGCCTACGGCATCATCATCTGTGCTAATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55618399|ref|XP_516137.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55618399|ref|XP_516137.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               138-1078, gnl|bosTau2|chr2 (70959351-70960306)
               

               
               138-1078, gnl|Hg17|chr2 (230736953-230736001)
               

               
               138-1078, gnl|Mm7|chr1_random (853164-854112)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               138-1078, gnl|bosTau2|chr2 (70959351-70960306)
               

               
               138-1078, gnl|Hg17|chr2 (230736953-230736001)
               

               
               138-1078, gnl|Mm7|chr1_random (853164-854112)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nmm (0.132802)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)
               

               
               ebs (0.118301)

	138-1078, gnl\|bosTau2\|chr2 (70959351-70960306)
	138-1078, gnl\|Hg17\|chr2 (230736953-230736001)
	138-1078, gnl\|Mm7\|chr1_random (853164-854112)