Non-Coding RNA Search

Ss1.1-rebs18c_l17.5

Sequence:


               
               CCACTCCCCCCGCGGGGAGGGTGGGCCATGGAGTGGGTCCTGGAGGGGCCTGTGAACTCT
GCTCCTGCACTTGGGCATCCCTGAAGGGGGCGCTCTTAGATCTCGGTCTTGTGAGGTTTC
GGTCAGAGAGGAGCCACGGGGACCCCACCCGGGCTTGGAGGGTTAGGATCAAAGGGTAGA
GAAGCGGGAAAGGGTCGCGAGGCCCTGGGTTGCAGCAGCCCCAGCACCAAGCATGTCACT
CACTGCCCTGCCATCCGTCTTCCTCTGTGCCCAGTCACCCCTGAGCCGAGGCTCCCACGT
CTCCGTCAGAGCCTGCATGCGACTGCTGTTCTCTTCCCGCCGCCCCGTGTCCCCGCCCCT
CACCGGCTGCCTGGAGCTCTTCTGCAGCTGGGGTGCTGGTGGTGCCCCCAGTGCTGGGCC
TGCAGCCTCCCGGGGCTGCTCTGAGGCGCGGGGGGGGGGGGGGGTGATGTGGAGAAGCCA
GGCAGTATTCAGCACAACCCTGGGGAGAGACCCTTCCCTCAGGCCTCCCCTGCCAACCTC
TGGGCTTGTCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACTCCCCCCGCGGGGAGGGTGGGCCATGGAGTGGGTCCTGGAGGGGCCTGTGAACTCT
GCTCCTGCACTTGGGCATCCCTGAAGGGGGCGCTCTTAGATCTCGGTCTTGTGAGGTTTC
GGTCAGAGAGGAGCCACGGGGACCCCACCCGGGCTTGGAGGGTTAGGATCAAAGGGTAGA
GAAGCGGGAAAGGGTCGCGAGGCCCTGGGTTGCAGCAGCCCCAGCACCAAGCATGTCACT
CACTGCCCTGCCATCCGTCTTCCTCTGTGCCCAGTCACCCCTGAGCCGAGGCTCCCACGT
CTCCGTCAGAGCCTGCATGCGACTGCTGTTCTCTTCCCGCCGCCCCGTGTCCCCGCCCCT
CACCGGCTGCCTGGAGCTCTTCTGCAGCTGGGGTGCTGGTGGTGCCCCCAGTGCTGGGCC
TGCAGCCTCCCGGGGCTGCTCTGAGGCGCGGGGGGGGGGGGGGGTGATGTGGAGAAGCCA
GGCAGTATTCAGCACAACCCTGGGGAGAGACCCTTCCCTCAGGCCTCCCCTGCCAACCTC
TGGGCTTGTCAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               220-335, - strand, RNAz p=0.736923

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               220-335, - strand, RNAz p=0.736923

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-552, gnl|bosTau2|chr19 (31092122-31091605)
               

               
               1-552, gnl|canFam2|chr9 (27683360-27683990)
               

               
               1-552, gnl|dasNov1|scaffold_5875 (3343-3990)
               

               
               1-552, gnl|echTel1|scaffold_312618 (45355-45986)
               

               
               1-552, gnl|hg17|chr17 (43492461-43493137)
               

               
               1-552, gnl|Hg17|chr17 (43492527-43493113)
               

               
               1-552, gnl|loxAfr1|scaffold_138 (3693-4369)
               

               
               1-552, gnl|mm7|chr11 (96927824-96927214)
               

               
               1-552, gnl|Mm7|chr11 (96927763-96927235)
               

               
               1-552, gnl|monDom2|scaffold_18 (46322631-46321963)
               

               
               1-552, gnl|panTro1|chr19_random (42429168-42429849)
               

               
               1-552, gnl|rheMac2|chr16 (32275664-32276335)
               

               
               1-552, gnl|rn3|chr10 (85590272-85589633)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-552, gnl|bosTau2|chr19 (31092122-31091605)
               

               
               1-552, gnl|canFam2|chr9 (27683360-27683990)
               

               
               1-552, gnl|dasNov1|scaffold_5875 (3343-3990)
               

               
               1-552, gnl|echTel1|scaffold_312618 (45355-45986)
               

               
               1-552, gnl|hg17|chr17 (43492461-43493137)
               

               
               1-552, gnl|Hg17|chr17 (43492527-43493113)
               

               
               1-552, gnl|loxAfr1|scaffold_138 (3693-4369)
               

               
               1-552, gnl|mm7|chr11 (96927824-96927214)
               

               
               1-552, gnl|Mm7|chr11 (96927763-96927235)
               

               
               1-552, gnl|monDom2|scaffold_18 (46322631-46321963)
               

               
               1-552, gnl|panTro1|chr19_random (42429168-42429849)
               

               
               1-552, gnl|rheMac2|chr16 (32275664-32276335)
               

               
               1-552, gnl|rn3|chr10 (85590272-85589633)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               cov (0.396458)
               

               
               ebs (0.236602)
               

               
               eye (0.170503)
               

               
               eru (0.120048)
               

               
               med (0.116252)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.396458)
               

               
               ebs (0.236602)
               

               
               eye (0.170503)
               

               
               eru (0.120048)
               

               
               med (0.116252)

	1-552, gnl\|bosTau2\|chr19 (31092122-31091605)
	1-552, gnl\|canFam2\|chr9 (27683360-27683990)
	1-552, gnl\|dasNov1\|scaffold_5875 (3343-3990)
	1-552, gnl\|echTel1\|scaffold_312618 (45355-45986)
	1-552, gnl\|hg17\|chr17 (43492461-43493137)
	1-552, gnl\|Hg17\|chr17 (43492527-43493113)
	1-552, gnl\|loxAfr1\|scaffold_138 (3693-4369)
	1-552, gnl\|mm7\|chr11 (96927824-96927214)
	1-552, gnl\|Mm7\|chr11 (96927763-96927235)
	1-552, gnl\|monDom2\|scaffold_18 (46322631-46321963)
	1-552, gnl\|panTro1\|chr19_random (42429168-42429849)
	1-552, gnl\|rheMac2\|chr16 (32275664-32276335)
	1-552, gnl\|rn3\|chr10 (85590272-85589633)

	cov (0.396458)
	ebs (0.236602)
	eye (0.170503)
	eru (0.120048)
	med (0.116252)