Non-Coding RNA Search

Ss1.1-rebs18c_p15.5

Sequence:


               
               CGTTAAAGCACTGGCTTTCCCAGAACTTTGCACATTCCTTTCAGTGATTTTGGTATGTGC
ATAGATTTTAAAAAATTGACCTTTATGAGAATTAGGGAAAAGATCAGTGTTTGCCATGTG
GCAAAACGACAAAGTAAGGTAAATGATCTTCATATTCTAGCTTTCAAAGGAAATTAAACT
ATTGCTTGAATAAATAAACTGTTTTAAACATGTGGTGAAGTGTCGTTTTCCTTTCTGAAC
AACAAAAGGGAATTTGATTTCAGCAGAGCTCAGAGGTTTGTGTGTTTGTGTTCTCTTGGC
TGGGACTTGGATCTTGATGGCTTTGAGCCTTTATCGGTGACCTAGAGGCTAAGGGCTTTG
ATAGGAAGTGGGGGCAGCTGCCTCTCCAGCTCCACGTTTGAGTGCCCATGTTGGTGAGAC
CCCTGCTTCTGGAGAGTTCTGTGCAGGAGCAGTGGCCTCTTGGGAGGGCCCAGCCTGCTG
GGATTGGTGCAGAGAGGTTTGACCATCCCTCTTACCAGGGAGGAAGTTTCTCTTCCCTGT
GGCTAACCCAGCCATCTAGCAGCATCAAGTTCTGTGAATATCTATTTCCCTATAATATTG
ATGCTCAAAGCACAAAATTACATCCAACTTTATATCCATTTTTCACTTAATTTTTCTGGT
TTATTGAAAACCAAGTATAAGTGACTGTAAAAATACTTTGCTCTATTTTTATGATCACTT
TCTTGATCGTAAGATTATAAACTTTTTTTTTTTTTTTTTTTTTGCAGTGTAGAGCTTGAT
GGGCCAGGTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTTAAAGCACTGGCTTTCCCAGAACTTTGCACATTCCTTTCAGTGATTTTGGTATGTGC
ATAGATTTTAAAAAATTGACCTTTATGAGAATTAGGGAAAAGATCAGTGTTTGCCATGTG
GCAAAACGACAAAGTAAGGTAAATGATCTTCATATTCTAGCTTTCAAAGGAAATTAAACT
ATTGCTTGAATAAATAAACTGTTTTAAACATGTGGTGAAGTGTCGTTTTCCTTTCTGAAC
AACAAAAGGGAATTTGATTTCAGCAGAGCTCAGAGGTTTGTGTGTTTGTGTTCTCTTGGC
TGGGACTTGGATCTTGATGGCTTTGAGCCTTTATCGGTGACCTAGAGGCTAAGGGCTTTG
ATAGGAAGTGGGGGCAGCTGCCTCTCCAGCTCCACGTTTGAGTGCCCATGTTGGTGAGAC
CCCTGCTTCTGGAGAGTTCTGTGCAGGAGCAGTGGCCTCTTGGGAGGGCCCAGCCTGCTG
GGATTGGTGCAGAGAGGTTTGACCATCCCTCTTACCAGGGAGGAAGTTTCTCTTCCCTGT
GGCTAACCCAGCCATCTAGCAGCATCAAGTTCTGTGAATATCTATTTCCCTATAATATTG
ATGCTCAAAGCACAAAATTACATCCAACTTTATATCCATTTTTCACTTAATTTTTCTGGT
TTATTGAAAACCAAGTATAAGTGACTGTAAAAATACTTTGCTCTATTTTTATGATCACTT
TCTTGATCGTAAGATTATAAACTTTTTTTTTTTTTTTTTTTTTGCAGTGTAGAGCTTGAT
GGGCCAGGTAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               627-745, + strand, RNAz p=0.974802

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               627-745, + strand, RNAz p=0.974802

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_194434, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_194434, +

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               3-261, gnl|bosTau2|chr24 (30130367-30130103)
               

               
               3-261, gnl|canFam2|chr7 (78937131-78937392)
               

               
               3-261, gnl|dasNov1|scaffold_5286 (4961-4728)
               

               
               3-261, gnl|echTel1|scaffold_300387 (22654-22911)
               

               
               3-261, gnl|hg17|chr18 (9947421-9947668)
               

               
               3-261, gnl|Hg17|chr18 (9947503-9947728)
               

               
               3-261, gnl|loxAfr1|scaffold_231324 (737-1004)
               

               
               3-261, gnl|mm7|chr17 (63795062-63794861)
               

               
               3-261, gnl|monDom2|scaffold_21 (22751473-22751197)
               

               
               3-261, gnl|oryCun1|scaffold_209565 (52357-52095)
               

               
               3-261, gnl|panTro1|chr17 (2713585-2713338)
               

               
               3-261, gnl|rheMac2|chr18 (4496589-4496341)
               

               
               3-261, gnl|rn3|chr9 (104543583-104543304)
               


               
               560-745, gnl|bosTau2|chr24 (30129735-30129535)
               

               
               560-745, gnl|Hg17|chr18 (9948095-9948287)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-261, gnl|bosTau2|chr24 (30130367-30130103)
               

               
               3-261, gnl|canFam2|chr7 (78937131-78937392)
               

               
               3-261, gnl|dasNov1|scaffold_5286 (4961-4728)
               

               
               3-261, gnl|echTel1|scaffold_300387 (22654-22911)
               

               
               3-261, gnl|hg17|chr18 (9947421-9947668)
               

               
               3-261, gnl|Hg17|chr18 (9947503-9947728)
               

               
               3-261, gnl|loxAfr1|scaffold_231324 (737-1004)
               

               
               3-261, gnl|mm7|chr17 (63795062-63794861)
               

               
               3-261, gnl|monDom2|scaffold_21 (22751473-22751197)
               

               
               3-261, gnl|oryCun1|scaffold_209565 (52357-52095)
               

               
               3-261, gnl|panTro1|chr17 (2713585-2713338)
               

               
               3-261, gnl|rheMac2|chr18 (4496589-4496341)
               

               
               3-261, gnl|rn3|chr9 (104543583-104543304)
               


               
               560-745, gnl|bosTau2|chr24 (30129735-30129535)
               

               
               560-745, gnl|Hg17|chr18 (9948095-9948287)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               fcc (0.197785)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               ebs (0.118301)

	3-261, gnl\|bosTau2\|chr24 (30130367-30130103)
	3-261, gnl\|canFam2\|chr7 (78937131-78937392)
	3-261, gnl\|dasNov1\|scaffold_5286 (4961-4728)
	3-261, gnl\|echTel1\|scaffold_300387 (22654-22911)
	3-261, gnl\|hg17\|chr18 (9947421-9947668)
	3-261, gnl\|Hg17\|chr18 (9947503-9947728)
	3-261, gnl\|loxAfr1\|scaffold_231324 (737-1004)
	3-261, gnl\|mm7\|chr17 (63795062-63794861)
	3-261, gnl\|monDom2\|scaffold_21 (22751473-22751197)
	3-261, gnl\|oryCun1\|scaffold_209565 (52357-52095)
	3-261, gnl\|panTro1\|chr17 (2713585-2713338)
	3-261, gnl\|rheMac2\|chr18 (4496589-4496341)
	3-261, gnl\|rn3\|chr9 (104543583-104543304)

	560-745, gnl\|bosTau2\|chr24 (30129735-30129535)
	560-745, gnl\|Hg17\|chr18 (9948095-9948287)