Non-Coding RNA Search

Ss1.1-rebs19c_c17.5

Sequence:


               
               AAGCAGAGGAAATAGGAGCTAGTGTCCGAGATTTACCTGGTCTTAAGACCCCCCTGGGTC
GTGCAAGAGCATGGCTTCGATTAGCCCTCATGCAAAAAAAAATGGCTGATTACCTGCGTT
GCCTAATTATTCAGAGGGATCTCTTGAGTGAATTCTATGAGTATCATGCACTAATGATGG
AAGAAGAAGGAGCAGTGATTGTTGGGCTGCTGGTTGGCCTGAATGTGATAGATGCTAATC
TGTGTGTAAAGGGAGAGGATTTAGACTCACAAGTTGGAGTGATTGACTTTTCCATGTATT
TAAAGAATGAAGAAGATATTGGAAATAAAGAAAGAAATGTTCAAATTGCTGCTATATTAG
ACCAGAAGAATTATGTTGAAGAATTAAATAGACAACTGAACAGTACAGTCAGCAGTCTCC
ATTCAAGAGTTGACTCATTAGAAAAGTCAAATACTAAGCTGATTGAAGAGTTAGCAATAG
CAAAGAATAATATCATTAAACTCCAAGAAGAAAATCATCAGTTACGAAGTGAAAATAAAT
TGATTTTAATGAAAACACAGCAGCATCTAGAAGTTACCAAAGTAGATGTGGAAACTGAGC
TTCAAACATATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCAGAGGAAATAGGAGCTAGTGTCCGAGATTTACCTGGTCTTAAGACCCCCCTGGGTC
GTGCAAGAGCATGGCTTCGATTAGCCCTCATGCAAAAAAAAATGGCTGATTACCTGCGTT
GCCTAATTATTCAGAGGGATCTCTTGAGTGAATTCTATGAGTATCATGCACTAATGATGG
AAGAAGAAGGAGCAGTGATTGTTGGGCTGCTGGTTGGCCTGAATGTGATAGATGCTAATC
TGTGTGTAAAGGGAGAGGATTTAGACTCACAAGTTGGAGTGATTGACTTTTCCATGTATT
TAAAGAATGAAGAAGATATTGGAAATAAAGAAAGAAATGTTCAAATTGCTGCTATATTAG
ACCAGAAGAATTATGTTGAAGAATTAAATAGACAACTGAACAGTACAGTCAGCAGTCTCC
ATTCAAGAGTTGACTCATTAGAAAAGTCAAATACTAAGCTGATTGAAGAGTTAGCAATAG
CAAAGAATAATATCATTAAACTCCAAGAAGAAAATCATCAGTTACGAAGTGAAAATAAAT
TGATTTTAATGAAAACACAGCAGCATCTAGAAGTTACCAAAGTAGATGTGGAAACTGAGC
TTCAAACATATA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|48476351|gb|AAT44401.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|48476351|gb|AAT44401.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               47-168, gnl|bosTau2|chr28 (16911742-16911863)
               

               
               47-168, gnl|Hg17|chr10 (69826644-69826523)
               

               
               47-168, gnl|Mm7|chr10 (62509767-62509888)
               


               
               174-513, gnl|bosTau2|chr19 (6527041-6527380)
               

               
               174-513, gnl|Hg17|chr5 (105780428-105780089)
               

               
               174-513, gnl|Mm7|chr5 (88567621-88572940)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               47-168, gnl|bosTau2|chr28 (16911742-16911863)
               

               
               47-168, gnl|Hg17|chr10 (69826644-69826523)
               

               
               47-168, gnl|Mm7|chr10 (62509767-62509888)
               


               
               174-513, gnl|bosTau2|chr19 (6527041-6527380)
               

               
               174-513, gnl|Hg17|chr5 (105780428-105780089)
               

               
               174-513, gnl|Mm7|chr5 (88567621-88572940)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ece (0.229305)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               ebs (0.118301)

	47-168, gnl\|bosTau2\|chr28 (16911742-16911863)
	47-168, gnl\|Hg17\|chr10 (69826644-69826523)
	47-168, gnl\|Mm7\|chr10 (62509767-62509888)

	174-513, gnl\|bosTau2\|chr19 (6527041-6527380)
	174-513, gnl\|Hg17\|chr5 (105780428-105780089)
	174-513, gnl\|Mm7\|chr5 (88567621-88572940)