Non-Coding RNA Search

Ss1.1-rebs19c_g10.5

Sequence:


               
               TATTTCAGAAAGCAGTGTAGTATTGTACCCTGGAAACTCTAACCCTTTATCAGAATCACA
AGGGTGTGTTCCATGGTTTTGGTCTGAGCCCTTGATCTCTGGGGAAAGAGGCTAACCCTC
CTTTGTTTTCAGCCTTGTGGTTTCTTTCTGATACTCTGGCCAGAGCCAATAAGCTAAATA
GCCTGTCTAAATTTCTTCAACAAATGCATGGATTGTTTCTCCAAATAAAACATGGCCAAG
GAGTTCCTGTCATGGTTCCTAGTCAGATTTGTTTTTGCTGCGCCATGATGGGAAACTCCC
TATTTGTGTGTATTGTATGTATTACAATACATGTAAAGGGATTACATTTTCTTGTCTTAA
AAATATGTTATCACGGCTTGCTCTAGAACCCAAGCAGACCAACCAACAAATGTGTGTGAA
TGGAGTTCCTGTTTAAGGAAAAAATCTGATAACTTGAACAGGTAGAGCCNTTCCAAAATA
GATCATTCTTAACAAGATTTTGCCCATTAATTTTGCACAGCTGAAATAATCCTGATACAA
AACTAGAAGATAGCTCCTAAAGAGCAAAATCTAGACCAGCTTCGTTTAAAAAGATTCCAT
GCTTCATAATTCTAGATAGTTGTATTTAGAATTTATTACAAAATCAGTCTTCGCTAATAT
GTCAGTGTTTTGCCTTTCCCAAGTACCAACTATCTCCGAAAGATCTGTGTTTAACATAGC
ATAAGGCTTTAACCCAACGAGTTTGTTACGGGGGAGTGGGGGGAGATTTCTTAGGGGAGA
AGTGCAAGTGAAACAAGGATTAAAATAGCTGCTTTTGCAGGAAATCCAATACACATTGTC
AGCTTGTAAAAAAATGGATTAAAGAAATTTTAATTTCATACAGTGTATCTCTAATATACT
TCATTGTGCATTCCTCACTCCAAATGTCTCTTAACACCTTTAGAATGTGAACCACTTTGA
TAGATGCTACCACAACCGCAAGGAATGTCTTCAAGGATGTCATTTCAGACATCATGGTGA
GTGGTTTTGTTGGGAAGGGGTGCGGAAGGGAACTTTTCTTTGCAGCTCATATCATACTCT
GGAAGCAGATTCCTGCTTGAATGGAGGGCTAGTGCTTTTCTATAGAATGGAAAAGGTTCC
AGCCTGATTCTTGATAATGTATATATTGAATATGCTTAAATATTCTATTAAATAGTGATT
AGGACATAAGTGAATTTTCATTCTAATAAAGATGCTATGCTGCTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTTCAGAAAGCAGTGTAGTATTGTACCCTGGAAACTCTAACCCTTTATCAGAATCACA
AGGGTGTGTTCCATGGTTTTGGTCTGAGCCCTTGATCTCTGGGGAAAGAGGCTAACCCTC
CTTTGTTTTCAGCCTTGTGGTTTCTTTCTGATACTCTGGCCAGAGCCAATAAGCTAAATA
GCCTGTCTAAATTTCTTCAACAAATGCATGGATTGTTTCTCCAAATAAAACATGGCCAAG
GAGTTCCTGTCATGGTTCCTAGTCAGATTTGTTTTTGCTGCGCCATGATGGGAAACTCCC
TATTTGTGTGTATTGTATGTATTACAATACATGTAAAGGGATTACATTTTCTTGTCTTAA
AAATATGTTATCACGGCTTGCTCTAGAACCCAAGCAGACCAACCAACAAATGTGTGTGAA
TGGAGTTCCTGTTTAAGGAAAAAATCTGATAACTTGAACAGGTAGAGCCNTTCCAAAATA
GATCATTCTTAACAAGATTTTGCCCATTAATTTTGCACAGCTGAAATAATCCTGATACAA
AACTAGAAGATAGCTCCTAAAGAGCAAAATCTAGACCAGCTTCGTTTAAAAAGATTCCAT
GCTTCATAATTCTAGATAGTTGTATTTAGAATTTATTACAAAATCAGTCTTCGCTAATAT
GTCAGTGTTTTGCCTTTCCCAAGTACCAACTATCTCCGAAAGATCTGTGTTTAACATAGC
ATAAGGCTTTAACCCAACGAGTTTGTTACGGGGGAGTGGGGGGAGATTTCTTAGGGGAGA
AGTGCAAGTGAAACAAGGATTAAAATAGCTGCTTTTGCAGGAAATCCAATACACATTGTC
AGCTTGTAAAAAAATGGATTAAAGAAATTTTAATTTCATACAGTGTATCTCTAATATACT
TCATTGTGCATTCCTCACTCCAAATGTCTCTTAACACCTTTAGAATGTGAACCACTTTGA
TAGATGCTACCACAACCGCAAGGAATGTCTTCAAGGATGTCATTTCAGACATCATGGTGA
GTGGTTTTGTTGGGAAGGGGTGCGGAAGGGAACTTTTCTTTGCAGCTCATATCATACTCT
GGAAGCAGATTCCTGCTTGAATGGAGGGCTAGTGCTTTTCTATAGAATGGAAAAGGTTCC
AGCCTGATTCTTGATAATGTATATATTGAATATGCTTAAATATTCTATTAAATAGTGATT
AGGACATAAGTGAATTTTCATTCTAATAAAGATGCTATGCTGCTAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               517-672, - strand, RNAz p=0.998916
               

               
               1057-1176, - strand, RNAz p=0.62177

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               517-672, - strand, RNAz p=0.998916
               

               
               1057-1176, - strand, RNAz p=0.62177

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               583-718, - strand, RNAmicro p=0.995183

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               583-718, - strand, RNAmicro p=0.995183

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               300-738, gnl|bosTau2|chr18 (42981239-42980804)
               

               
               300-738, gnl|Hg17|chr19 (41518467-41518022)
               


               
               774-1238, gnl|bosTau2|chr18 (42980741-42980272)
               

               
               774-1238, gnl|Hg17|chr19 (41517958-41517206)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               300-738, gnl|bosTau2|chr18 (42981239-42980804)
               

               
               300-738, gnl|Hg17|chr19 (41518467-41518022)
               


               
               774-1238, gnl|bosTau2|chr18 (42980741-42980272)
               

               
               774-1238, gnl|Hg17|chr19 (41517958-41517206)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	517-672, - strand, RNAz p=0.998916
	1057-1176, - strand, RNAz p=0.62177

	300-738, gnl\|bosTau2\|chr18 (42981239-42980804)
	300-738, gnl\|Hg17\|chr19 (41518467-41518022)

	774-1238, gnl\|bosTau2\|chr18 (42980741-42980272)
	774-1238, gnl\|Hg17\|chr19 (41517958-41517206)