Non-Coding RNA Search

Ss1.1-rebs19c_n12.5

Sequence:


               
               ATTTTATGCATTTGTCCTCTCCAATGTATATGCACTGAGAGGCACAGGCATGTGGACTGT
TCAGGCAGAAACTTGACTACATTACCATCTGGACTGCAAGAGAACATTATCCATTTAAAT
CTGTCTTATAACCACTTTACTGATCTGCATAACCAGCTAACCCAGTACACCAATCTGAGG
ACCCTGGACATTTCAAACAACAGGCTTGAAAGCTTGCCTGCTCAGTTGCCTCGGTCCCTC
TGGAACATGTCTGCTGCTAACAACAACATTAAACTGCTTGAAAAATCTGATACTGCTTAT
CAGTGGAACCTTAAATATCTGGATGTGTCTAAGAATATGCTGGAAAAGGTTGTCCTCATT
AAAAACACACTAAGAAGCCTTGAGGTTCTCAACCTCAGTAGTAACAAACTCTGGACAGTT
CCAACCAACATGCCCTCCAAACTACATATCGTGGACCTGTCTCACAATTCCTTGACACAA
ATCCTTCCAGGAACATTAATAAACCTGACAAATCTCACACATCTTTACCTGCACAACAAT
AAGTTCACATTCATTCCTGATCAAGCTTTTGATCAACTCCTTCAGTTGCAAGAGATAACC
CTTTACAATAACAGGTGGTCATGTGGCCACCAACAAAACATTACTTACTTACTTAAATGG
ATGATGGAAACAAAAGCCCATGTGATAGGGACCCCCTGTTCTAGCCAAATATCATCTCTG
AAGGAACATAGCATATATCCCACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTATGCATTTGTCCTCTCCAATGTATATGCACTGAGAGGCACAGGCATGTGGACTGT
TCAGGCAGAAACTTGACTACATTACCATCTGGACTGCAAGAGAACATTATCCATTTAAAT
CTGTCTTATAACCACTTTACTGATCTGCATAACCAGCTAACCCAGTACACCAATCTGAGG
ACCCTGGACATTTCAAACAACAGGCTTGAAAGCTTGCCTGCTCAGTTGCCTCGGTCCCTC
TGGAACATGTCTGCTGCTAACAACAACATTAAACTGCTTGAAAAATCTGATACTGCTTAT
CAGTGGAACCTTAAATATCTGGATGTGTCTAAGAATATGCTGGAAAAGGTTGTCCTCATT
AAAAACACACTAAGAAGCCTTGAGGTTCTCAACCTCAGTAGTAACAAACTCTGGACAGTT
CCAACCAACATGCCCTCCAAACTACATATCGTGGACCTGTCTCACAATTCCTTGACACAA
ATCCTTCCAGGAACATTAATAAACCTGACAAATCTCACACATCTTTACCTGCACAACAAT
AAGTTCACATTCATTCCTGATCAAGCTTTTGATCAACTCCTTCAGTTGCAAGAGATAACC
CTTTACAATAACAGGTGGTCATGTGGCCACCAACAAAACATTACTTACTTACTTAAATGG
ATGATGGAAACAAAAGCCCATGTGATAGGGACCCCCTGTTCTAGCCAAATATCATCTCTG
AAGGAACATAGCATATATCCCACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55727387|emb|CAH90449.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55727387|emb|CAH90449.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-120, - strand, RNAz p=0.851486
               

               
               361-720, - strand, RNAz p=0.981997

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-120, - strand, RNAz p=0.851486
               

               
               361-720, - strand, RNAz p=0.981997

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-744, gnl|bosTau2|chr19 (9785993-9785250)
               

               
               1-744, gnl|Hg17|chr17 (26647412-26646669)
               

               
               1-744, gnl|Mm7|chr11 (79584533-79583790)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-744, gnl|bosTau2|chr19 (9785993-9785250)
               

               
               1-744, gnl|Hg17|chr17 (26647412-26646669)
               

               
               1-744, gnl|Mm7|chr11 (79584533-79583790)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fhi (0.169578)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

	1-120, - strand, RNAz p=0.851486
	361-720, - strand, RNAz p=0.981997

	1-744, gnl\|bosTau2\|chr19 (9785993-9785250)
	1-744, gnl\|Hg17\|chr17 (26647412-26646669)
	1-744, gnl\|Mm7\|chr11 (79584533-79583790)