Non-Coding RNA Search

Ss1.1-rebs20c_c1.5

Sequence:


               
               ATCTCAAATGCATAGTGTTTGTTTATATTACAGGCTTTTTCCTTCTTGATTTCTCCTGGT
TCTTTTTCTTCCTCTCCTAATATCAGGAAGTAAATAGTTTTTATTAGCTCTCAGGAGCTC
AGTCTTTATTGCCATCTGTTACTTTGTTATATGTTGAGAGCCCTGTAGGTGGTTTTATGT
TCCTTTTATGCCCTAGAGGTAGTAGGCTTTAGTATGGGATGAGATTTCCTCTCCCCCCCC
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------CTTTCAATTAGCTTTTTTTTTCTTCTAAGTTTTATTCTGTTTGCCTTT
TAAAAACCCCTAATAAAATAAAGGATTCACTGGACACGTGTGACTATTGAAATGAACCAG
CCAAAGGACAGGAAAACCTACTGACATTGTCGTTCTCACAGCTTGTCCAGACGCCCTGTT
CAACGAGCTGGTAAAATCGCGAGCCGCCAAAGTCATCAAAACTCTGACGGAAATCAACAT
AGCCTTTCTCCCGTATGAGTCCCAGGTGTATTCCTTGGACTCTGCTGACTCCTTCCAAAG
CTTCTACAGTCCCCACAAGGCTCAGATGAAGAATCCAATCCTGGAGCGCCTGGCAGAGCA
GATCGCCACTCTGTGTGCCACCCTGAAGGAGTACCCAGCTGTGCGGTATCGGGGGGAATA
CAAGGACAATGCTTTGCTGGCTCAGAGAGGGCCTCGTCTCAGTTATTTCTGACTCTTTCC
AGCCACCAGGCCCTTCCTGATGTTCATTTCATCCTCGCTCGCAGTGTTCGCTCCTATTGG
CCAGCTCCGAAAAGCAGCCAATCCAGAAAGAGCCTGGGCGGGGCGGAGGGGCAGGGCTCC
GCCCACACCCATCTGCTGCGAAGGAGGCTGTTTTTATTTTATGTGAGATAACCTCGGCTT
GTCATGTGCTGAAGGAACAGATGGCAGCCTTTGCTATGAGCTGTTAACGCTTCGAGCGCC
AAAACCGCTCCCCTTGGAAAAACGCACCGTCGTTAAACCAGTAAAGGTGAAGCTGACTGG
GAGCGAACGTACCAAATGTATACCTTAGTATTTCAAGGTTTGTTAAAATGCCTCCTCCTA
GCAAAAAAAAAAACACACCTTTTATGCATTTGGTAGAGGTAAGAGATGATGGTGGCCTAT
TGGGTCTTTACAGATCCGCTTCTAGATGCCAGAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTCAAATGCATAGTGTTTGTTTATATTACAGGCTTTTTCCTTCTTGATTTCTCCTGGT
TCTTTTTCTTCCTCTCCTAATATCAGGAAGTAAATAGTTTTTATTAGCTCTCAGGAGCTC
AGTCTTTATTGCCATCTGTTACTTTGTTATATGTTGAGAGCCCTGTAGGTGGTTTTATGT
TCCTTTTATGCCCTAGAGGTAGTAGGCTTTAGTATGGGATGAGATTTCCTCTCCCCCCCC
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------CTTTCAATTAGCTTTTTTTTTCTTCTAAGTTTTATTCTGTTTGCCTTT
TAAAAACCCCTAATAAAATAAAGGATTCACTGGACACGTGTGACTATTGAAATGAACCAG
CCAAAGGACAGGAAAACCTACTGACATTGTCGTTCTCACAGCTTGTCCAGACGCCCTGTT
CAACGAGCTGGTAAAATCGCGAGCCGCCAAAGTCATCAAAACTCTGACGGAAATCAACAT
AGCCTTTCTCCCGTATGAGTCCCAGGTGTATTCCTTGGACTCTGCTGACTCCTTCCAAAG
CTTCTACAGTCCCCACAAGGCTCAGATGAAGAATCCAATCCTGGAGCGCCTGGCAGAGCA
GATCGCCACTCTGTGTGCCACCCTGAAGGAGTACCCAGCTGTGCGGTATCGGGGGGAATA
CAAGGACAATGCTTTGCTGGCTCAGAGAGGGCCTCGTCTCAGTTATTTCTGACTCTTTCC
AGCCACCAGGCCCTTCCTGATGTTCATTTCATCCTCGCTCGCAGTGTTCGCTCCTATTGG
CCAGCTCCGAAAAGCAGCCAATCCAGAAAGAGCCTGGGCGGGGCGGAGGGGCAGGGCTCC
GCCCACACCCATCTGCTGCGAAGGAGGCTGTTTTTATTTTATGTGAGATAACCTCGGCTT
GTCATGTGCTGAAGGAACAGATGGCAGCCTTTGCTATGAGCTGTTAACGCTTCGAGCGCC
AAAACCGCTCCCCTTGGAAAAACGCACCGTCGTTAAACCAGTAAAGGTGAAGCTGACTGG
GAGCGAACGTACCAAATGTATACCTTAGTATTTCAAGGTTTGTTAAAATGCCTCCTCCTA
GCAAAAAAAAAAACACACCTTTTATGCATTTGGTAGAGGTAAGAGATGATGGTGGCCTAT
TGGGTCTTTACAGATCCGCTTCTAGATGCCAGAGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47194277|emb|CAF94733.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47194277|emb|CAF94733.1|

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               1-230, gnl|bosTau2|chr11 (79515474-79515709)
               


               
               277-496, gnl|bosTau2|chr11 (79515708-79515924)
               

               
               277-496, gnl|Hg17|chr9 (127502784-127503041)
               

               
               277-496, gnl|Mm7|chr2 (32824827-32824594)
               


               
               688-1152, gnl|bosTau2|chr11 (79516126-79516599)
               

               
               688-1152, gnl|Hg17|chr9 (127503230-127503721)
               

               
               688-1152, gnl|Mm7|chr2 (32824512-32824055)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-230, gnl|bosTau2|chr11 (79515474-79515709)
               


               
               277-496, gnl|bosTau2|chr11 (79515708-79515924)
               

               
               277-496, gnl|Hg17|chr9 (127502784-127503041)
               

               
               277-496, gnl|Mm7|chr2 (32824827-32824594)
               


               
               688-1152, gnl|bosTau2|chr11 (79516126-79516599)
               

               
               688-1152, gnl|Hg17|chr9 (127503230-127503721)
               

               
               688-1152, gnl|Mm7|chr2 (32824512-32824055)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	1-230, gnl\|bosTau2\|chr11 (79515474-79515709)

	277-496, gnl\|bosTau2\|chr11 (79515708-79515924)
	277-496, gnl\|Hg17\|chr9 (127502784-127503041)
	277-496, gnl\|Mm7\|chr2 (32824827-32824594)

	688-1152, gnl\|bosTau2\|chr11 (79516126-79516599)
	688-1152, gnl\|Hg17\|chr9 (127503230-127503721)
	688-1152, gnl\|Mm7\|chr2 (32824512-32824055)