Non-Coding RNA Search

Ss1.1-rebs20c_c5.5

Sequence:


               
               GCGGACTCCGAGAGACCAGCGGACCTCGGATCCGGCAGCACTCGCTCTCAACCACCAACC
CACCACCCTTGGAACCATGGCGGCGACTCCGAGAGACCAGCGGACCTCGGATCCGGCAGC
ACTCGCTCTCAACCACCAACCCACCACCCTTGGAACCATGGCGGCAGTGGCGGCAGCCTC
GGCTGAACTGCTCATCATCGGCTGGTACATTTTCCGCGTGCTGCTGCAGGTGTTCAGGTA
CTCCCTGCAGAAGCTGGCCTACACCGTGTCGAGAACCGGGCGGCACGTGCTGGGAGAGCG
CCGCCAGCGGGCCCCCAACTGAGGCTCCAGCCCCCAACCCTGGGCGGCCGTGTCACCAGG
TGCTCCTGTGCAATTCCACCAGCATGGGAGCCAGTGCCGCACAGGAACGGGGCGTCCCCT
GTGCCCTCTCGCCAGAGGAGCACTTGCCAAGGTCAGTGAGGGGCTGGTAGGCCCCCAGAG
AAGCAGCACCGACAATGACGACAATACCAGATTCCTTCCCCACCCCTTTGCACCCATCCT
GCTGCCGGTGGCATAGAGGGAGGAGGGGGGAATGGAGGGAGCAGACCCCTGAGATCTGGG
CACAGGCAACACATTCTGATCTGGACCAAGTCGGGACAGCGCCAATCAAGCCCGGCAGCC
ACGGCCATGCCAGCAGGCCACACCACAGACATCCAGACACCCACACCAGCCAGCAGAATG
GACAGTTCAACATCACCAGCTGAAGCCCTGAATCTTGGTGCAGCAGACAAGTGACAACTG
CGTGCCTGTGTGGCGGGACTAGAGGGCGAGGGTGAGGGAGGAGGGTTAAGAAGCAGAGAG
GGGCCCTCTCACTGTCCCTTGCCTACGGCGCATACATTCCAGCCTTGCTGCCTTTGCTCC
TTCAATTCCCCTTTCCCCCCACTCCCACCCAAAAGAAATGCATCACTCAATTTGGACCTA
CTGAACAAGAAGACAAATCCCATCTTTACCAAAACACCTTCTCCAAGCCCCCAGCCCCTC
ACTGATCTTGCATCCCCCAGGTCTCACGCAATTGTGGTCAATATTGTGGTAATCGCTAAC
TGTAATGATTGTATAAGTGTGCATTAGTTGTGTCTCCCCGGCTAGATTGTAAGCTCCTGG
AGGACAGGGACCGCCTCTACAAAAAATAAAAAAAGTACCTCCCCCGTCTTGCAATGTCCC
AGGACCCTGCGGGGCGGTGGAGGCGCACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGACTCCGAGAGACCAGCGGACCTCGGATCCGGCAGCACTCGCTCTCAACCACCAACC
CACCACCCTTGGAACCATGGCGGCGACTCCGAGAGACCAGCGGACCTCGGATCCGGCAGC
ACTCGCTCTCAACCACCAACCCACCACCCTTGGAACCATGGCGGCAGTGGCGGCAGCCTC
GGCTGAACTGCTCATCATCGGCTGGTACATTTTCCGCGTGCTGCTGCAGGTGTTCAGGTA
CTCCCTGCAGAAGCTGGCCTACACCGTGTCGAGAACCGGGCGGCACGTGCTGGGAGAGCG
CCGCCAGCGGGCCCCCAACTGAGGCTCCAGCCCCCAACCCTGGGCGGCCGTGTCACCAGG
TGCTCCTGTGCAATTCCACCAGCATGGGAGCCAGTGCCGCACAGGAACGGGGCGTCCCCT
GTGCCCTCTCGCCAGAGGAGCACTTGCCAAGGTCAGTGAGGGGCTGGTAGGCCCCCAGAG
AAGCAGCACCGACAATGACGACAATACCAGATTCCTTCCCCACCCCTTTGCACCCATCCT
GCTGCCGGTGGCATAGAGGGAGGAGGGGGGAATGGAGGGAGCAGACCCCTGAGATCTGGG
CACAGGCAACACATTCTGATCTGGACCAAGTCGGGACAGCGCCAATCAAGCCCGGCAGCC
ACGGCCATGCCAGCAGGCCACACCACAGACATCCAGACACCCACACCAGCCAGCAGAATG
GACAGTTCAACATCACCAGCTGAAGCCCTGAATCTTGGTGCAGCAGACAAGTGACAACTG
CGTGCCTGTGTGGCGGGACTAGAGGGCGAGGGTGAGGGAGGAGGGTTAAGAAGCAGAGAG
GGGCCCTCTCACTGTCCCTTGCCTACGGCGCATACATTCCAGCCTTGCTGCCTTTGCTCC
TTCAATTCCCCTTTCCCCCCACTCCCACCCAAAAGAAATGCATCACTCAATTTGGACCTA
CTGAACAAGAAGACAAATCCCATCTTTACCAAAACACCTTCTCCAAGCCCCCAGCCCCTC
ACTGATCTTGCATCCCCCAGGTCTCACGCAATTGTGGTCAATATTGTGGTAATCGCTAAC
TGTAATGATTGTATAAGTGTGCATTAGTTGTGTCTCCCCGGCTAGATTGTAAGCTCCTGG
AGGACAGGGACCGCCTCTACAAAAAATAAAAAAAGTACCTCCCCCGTCTTGCAATGTCCC
AGGACCCTGCGGGGCGGTGGAGGCGCACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9GMZ0_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9GMZ0_BOVIN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               386-625, - strand, RNAz p=0.952618
               

               
               1120-1234, - strand, RNAz p=0.996317

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               386-625, - strand, RNAz p=0.952618
               

               
               1120-1234, - strand, RNAz p=0.996317

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               227-1234, gnl|bosTau2|chr13 (49211073-49210052)
               

               
               227-1234, gnl|Hg17|chr20 (35584480-35585506)
               

               
               227-1234, gnl|Mm7|chr2 (157302429-157303412)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               227-1234, gnl|bosTau2|chr13 (49211073-49210052)
               

               
               227-1234, gnl|Hg17|chr20 (35584480-35585506)
               

               
               227-1234, gnl|Mm7|chr2 (157302429-157303412)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               ebs (4.37714)
               

               
               ece (4.3568)
               

               
               pgl (3.90995)
               

               
               fhi (1.69578)
               

               
               fce (1.62955)
               

               
               ecc (1.38042)
               

               
               hyp (0.42851)
               

               
               fcc (0.39557)
               

               
               fbs (0.350693)
               

               
               ese (0.253004)
               

               
               nlu (0.191681)
               

               
               eye (0.170503)
               

               
               fat (0.147427)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (4.37714)
               

               
               ece (4.3568)
               

               
               pgl (3.90995)
               

               
               fhi (1.69578)
               

               
               fce (1.62955)
               

               
               ecc (1.38042)
               

               
               hyp (0.42851)
               

               
               fcc (0.39557)
               

               
               fbs (0.350693)
               

               
               ese (0.253004)
               

               
               nlu (0.191681)
               

               
               eye (0.170503)
               

               
               fat (0.147427)

	386-625, - strand, RNAz p=0.952618
	1120-1234, - strand, RNAz p=0.996317

	227-1234, gnl\|bosTau2\|chr13 (49211073-49210052)
	227-1234, gnl\|Hg17\|chr20 (35584480-35585506)
	227-1234, gnl\|Mm7\|chr2 (157302429-157303412)

	ebs (4.37714)
	ece (4.3568)
	pgl (3.90995)
	fhi (1.69578)
	fce (1.62955)
	ecc (1.38042)
	hyp (0.42851)
	fcc (0.39557)
	fbs (0.350693)
	ese (0.253004)
	nlu (0.191681)
	eye (0.170503)
	fat (0.147427)