Non-Coding RNA Search

Ss1.1-rebs20c_f2.5

Sequence:


               
               CCGCGCTCCAAAGAAGGGAGGCCCGAGGCGGCGCGCTCGACGTGGCGCGCGCTGCCCACC
ACCCCACCTCGCGTCCCGGAGGCCCGCACGCACCCAGGAGCTAAGGTGTCCGCCGGGGTT
GCAGCCCTAAGGCAGAAGAACTGGGGGAGTAGGGTCGCCGCCTGCCTCACCTGGAGGAAC
TAGAAAGGCAGGTGGATAGGAGTCGCAGTGGAACCGCGGGGATGACCGGGCGAGGGAGGG
GGCTGGCTTCTGGGCGGTGCCAAGTCTGAAAGGGGGCGCGGTCACTGCAGAGCCTTCCAA
CCGAGGCTGAGGCCGCCACGTCCCGCTACCCCAGGCGTAAGAGGCAGCCCCCGGTCTGCT
GTCCTCAAGACCTCCAGACATGTCCGAGGTGAAGAGCCGGAAGAAGTCGGGGCCCAGGGG
AGCCTCCGCGGAGCCTGGGAAGAGGAGCGAGGCCGGGAAGAGCCCCGATGCTCGGGGCAG
TGGAGGCGGGGGCTGGGCGGACCCCCGGACCGGCGTTAGCCTGCTGTCGCTGGGGACGTG
CCTGGGCCTGGCCTGGTTTGTATTTCGGCAGTCAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCGCTCCAAAGAAGGGAGGCCCGAGGCGGCGCGCTCGACGTGGCGCGCGCTGCCCACC
ACCCCACCTCGCGTCCCGGAGGCCCGCACGCACCCAGGAGCTAAGGTGTCCGCCGGGGTT
GCAGCCCTAAGGCAGAAGAACTGGGGGAGTAGGGTCGCCGCCTGCCTCACCTGGAGGAAC
TAGAAAGGCAGGTGGATAGGAGTCGCAGTGGAACCGCGGGGATGACCGGGCGAGGGAGGG
GGCTGGCTTCTGGGCGGTGCCAAGTCTGAAAGGGGGCGCGGTCACTGCAGAGCCTTCCAA
CCGAGGCTGAGGCCGCCACGTCCCGCTACCCCAGGCGTAAGAGGCAGCCCCCGGTCTGCT
GTCCTCAAGACCTCCAGACATGTCCGAGGTGAAGAGCCGGAAGAAGTCGGGGCCCAGGGG
AGCCTCCGCGGAGCCTGGGAAGAGGAGCGAGGCCGGGAAGAGCCCCGATGCTCGGGGCAG
TGGAGGCGGGGGCTGGGCGGACCCCCGGACCGGCGTTAGCCTGCTGTCGCTGGGGACGTG
CCTGGGCCTGGCCTGGTTTGTATTTCGGCAGTCAGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|41529138|emb|CAD62382.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|41529138|emb|CAD62382.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               168-557, gnl|bosTau2|chr5 (39143499-39143108)
               

               
               168-557, gnl|Hg17|chr12 (97541156-97540767)
               

               
               168-557, gnl|Mm7|chr10 (90641711-90642070)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               168-557, gnl|bosTau2|chr5 (39143499-39143108)
               

               
               168-557, gnl|Hg17|chr12 (97541156-97540767)
               

               
               168-557, gnl|Mm7|chr10 (90641711-90642070)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nep (0.183925)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               ebs (0.118301)

	168-557, gnl\|bosTau2\|chr5 (39143499-39143108)
	168-557, gnl\|Hg17\|chr12 (97541156-97540767)
	168-557, gnl\|Mm7\|chr10 (90641711-90642070)