Ss1.1-rebs20c_h1.5
|
TTCCTCTGGAGTCTGGGTTCCATCGGCCCCCATCCTGGCCCTCTGGCTGCTGTAGTCGCT
GTGCTTCCCCAGGCGTGGGGCGGAGGAGGCCCTCTCCCGCTCCCCGCACGGCCATTTCCG
AGTAGTGAGAGCGGCCAGGGGCGCATTTCGCAGGGCAGTGGGATTCTGGCTTGCGAAGAT
TGGCATCCCATGGCGGGGGCGGAGGAAGGGAGGATCCGGCTTGGGAGGCTGTCGCTCCTG
CGCGCTTTTCCTTCGGGGCAGAACTCCGCACTCCGTGCTGCGTCCTTACCCGGCCCTGGA
CCCGTACGCAGTAGCCGCCGCGATGCTGATGCCCAAGAAGAACCGGATTGCCATTTATGA
ACTCCTTTTCAAGGAGGGAGTGATGGTGGCCAAAAAAGACGTGCACATGCCGAAGCACCC
CGAGCTGGCGGACAAGAATGTGCCTAATCTTCACGTCATGAAGGCCATGCAGTCACTCAA
GTCACGAGGCTACGTGAAGGAACAGTTTGCTTGGAGACATTTCTATTGGTACCTTACCAA
CGAGGGTATCCAGTATCTCCGTGATTACCTCCACCTCCCCCCTGAGATTGTGCCTGCTAC
CCTGCGCCGCAGCCGTCCTGAGACTGGCAGGCCACGGCCCAAAGGTCTGGAGGGAGAGCG
ACCTGCACGATTCACACGAGGGGAAGCTGACAGAGACACCTACAGACGAAGCGCTGTGCC
CCCTGGTGCTGACAAGAAAGCCGAGGCCGGAGCTGGGTCAGCAACAGAGTTCCAATTTAG
AGGCGGCTTTGGTCGTGGACGTGGTCAGCCTCCTCAGTAAAGTTGGAAGAGATTGTTTTG
TGTTGAATAAACCTGTAGCCAGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
TGTGTATCCTGAACAGTAATGGTTTAAAGATCAGAATGTTAATGGGATAAGACTGGATTG
GTTCAGGGAGTT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTCCTCTGGAGTCTGGGTTCCATCGGCCCCCATCCTGGCCCTCTGGCTGCTGTAGTCGCT
GTGCTTCCCCAGGCGTGGGGCGGAGGAGGCCCTCTCCCGCTCCCCGCACGGCCATTTCCG
AGTAGTGAGAGCGGCCAGGGGCGCATTTCGCAGGGCAGTGGGATTCTGGCTTGCGAAGAT
TGGCATCCCATGGCGGGGGCGGAGGAAGGGAGGATCCGGCTTGGGAGGCTGTCGCTCCTG
CGCGCTTTTCCTTCGGGGCAGAACTCCGCACTCCGTGCTGCGTCCTTACCCGGCCCTGGA
CCCGTACGCAGTAGCCGCCGCGATGCTGATGCCCAAGAAGAACCGGATTGCCATTTATGA
ACTCCTTTTCAAGGAGGGAGTGATGGTGGCCAAAAAAGACGTGCACATGCCGAAGCACCC
CGAGCTGGCGGACAAGAATGTGCCTAATCTTCACGTCATGAAGGCCATGCAGTCACTCAA
GTCACGAGGCTACGTGAAGGAACAGTTTGCTTGGAGACATTTCTATTGGTACCTTACCAA
CGAGGGTATCCAGTATCTCCGTGATTACCTCCACCTCCCCCCTGAGATTGTGCCTGCTAC
CCTGCGCCGCAGCCGTCCTGAGACTGGCAGGCCACGGCCCAAAGGTCTGGAGGGAGAGCG
ACCTGCACGATTCACACGAGGGGAAGCTGACAGAGACACCTACAGACGAAGCGCTGTGCC
CCCTGGTGCTGACAAGAAAGCCGAGGCCGGAGCTGGGTCAGCAACAGAGTTCCAATTTAG
AGGCGGCTTTGGTCGTGGACGTGGTCAGCCTCCTCAGTAAAGTTGGAAGAGATTGTTTTG
TGTTGAATAAACCTGTAGCCAGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
TGTGTATCCTGAACAGTAATGGTTTAAAGATCAGAATGTTAATGGGATAAGACTGGATTG
GTTCAGGGAGTT
|
|
gi|28189302|dbj|BAC56342.1| |
Protein identifier
|
gi|28189302|dbj|BAC56342.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
cje (3.63516) |
|
cag (3.62867) |
|
med (3.48756) |
|
elu (3.46821) |
|
che (3.40785) |
|
cki (2.80899) |
|
cly (2.77476) |
|
csp (2.74017) |
|
cst (2.52066) |
|
nco (2.42601) |
|
mcp (2.38908) |
|
nje (2.32288) |
|
nlu (2.30017) |
|
eje (2.27318) |
|
cga (2.23277) |
|
nmm (2.12483) |
|
ton (2.106) |
|
amn (2.08855) |
|
nca (2.05311) |
|
ssp (2.0328) |
|
fli (2.02881) |
|
lnt (1.99232) |
|
duo (1.90081) |
|
ese (1.89753) |
|
pty (1.85529) |
|
cov (1.85014) |
|
nep (1.83925) |
|
eep (1.83846) |
|
hlv (1.81033) |
|
eru (1.80072) |
|
nbm (1.78784) |
|
fty (1.7584) |
|
sin (1.74948) |
|
cli (1.68093) |
|
bla (1.61651) |
|
fcc (1.58228) |
|
jca (1.48148) |
|
ecc (1.38042) |
|
eli (1.36633) |
|
cut (1.35939) |
|
sme (1.22175) |
|
fhi (1.18704) |
|
pgl (1.18483) |
|
col (1.17005) |
|
jej (1.08814) |
|
fce (1.08637) |
|
ute (1.06228) |
|
ill (1.05356) |
|
ebs (0.94641) |
|
ece (0.917221) |
|
fbs (0.876732) |
|
nms (0.855432) |
|
mas (0.84122) |
|
hea (0.817996) |
|
eye (0.682012) |
|
ski (0.586941) |
|
pro (0.512033) |
|
thg (0.507164) |
|
fat (0.442282) |
|
hyp (0.42851) |
|
tes (0.415628) |
|
aor (0.390549) |
|
sug (0.381874) |
|
sto (0.359648) |
|
gul (0.355177) |
|
rec (0.346141) |
|
vin (0.332557) |
|
csk (0.281492) |
|
ova (0.258264) |
|
cbe (0.239234) |
|
pan (0.23596) |
|
cmu (0.186393) |
|
sag (0.182715) |
|
mga (0.160205) |
|
ste (0.135208) |
|
pla (0.133672) |
|
tra (0.123092) |
|
spc (0.113366) |
|
ldo (0.0970026) |
|
cje (3.63516) |
|
cag (3.62867) |
|
med (3.48756) |
|
elu (3.46821) |
|
che (3.40785) |
|
cki (2.80899) |
|
cly (2.77476) |
|
csp (2.74017) |
|
cst (2.52066) |
|
nco (2.42601) |
|
mcp (2.38908) |
|
nje (2.32288) |
|
nlu (2.30017) |
|
eje (2.27318) |
|
cga (2.23277) |
|
nmm (2.12483) |
|
ton (2.106) |
|
amn (2.08855) |
|
nca (2.05311) |
|
ssp (2.0328) |
|
fli (2.02881) |
|
lnt (1.99232) |
|
duo (1.90081) |
|
ese (1.89753) |
|
pty (1.85529) |
|
cov (1.85014) |
|
nep (1.83925) |
|
eep (1.83846) |
|
hlv (1.81033) |
|
eru (1.80072) |
|
nbm (1.78784) |
|
fty (1.7584) |
|
sin (1.74948) |
|
cli (1.68093) |
|
bla (1.61651) |
|
fcc (1.58228) |
|
jca (1.48148) |
|
ecc (1.38042) |
|
eli (1.36633) |
|
cut (1.35939) |
|
sme (1.22175) |
|
fhi (1.18704) |
|
pgl (1.18483) |
|
col (1.17005) |
|
jej (1.08814) |
|
fce (1.08637) |
|
ute (1.06228) |
|
ill (1.05356) |
|
ebs (0.94641) |
|
ece (0.917221) |
|
fbs (0.876732) |
|
nms (0.855432) |
|
mas (0.84122) |
|
hea (0.817996) |
|
eye (0.682012) |
|
ski (0.586941) |
|
pro (0.512033) |
|
thg (0.507164) |
|
fat (0.442282) |
|
hyp (0.42851) |
|
tes (0.415628) |
|
aor (0.390549) |
|
sug (0.381874) |
|
sto (0.359648) |
|
gul (0.355177) |
|
rec (0.346141) |
|
vin (0.332557) |
|
csk (0.281492) |
|
ova (0.258264) |
|
cbe (0.239234) |
|
pan (0.23596) |
|
cmu (0.186393) |
|
sag (0.182715) |
|
mga (0.160205) |
|
ste (0.135208) |
|
pla (0.133672) |
|
tra (0.123092) |
|
spc (0.113366) |
|
ldo (0.0970026) |
